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The ROC of Cox proportional hazards cure models with application in cancer studies

Author

Listed:
  • Yilong Zhang

    (Merck & Co., Inc)

  • Xiaoxia Han

    (Henry Ford Health System)

  • Yongzhao Shao

    (NYU Grossman School of Medicine)

Abstract

With recent advancement in cancer screening and treatment, many patients with cancers are identified at early stage and clinically cured. Importantly, uncured patients should be treated timely before the cancer progresses to advanced stages for which therapeutic options are rather limited. It is also crucial to identify uncured subjects among patients with early-stage cancers for clinical trials to develop effective adjuvant therapies. Thus, it is of interest to develop statistical predictive models with as high accuracy as possible in predicting the latent cure status. The receiver operating characteristic curve (ROC) and the area under the ROC curve (AUC) are among the most widely used statistical metrics for assessing predictive accuracy or discriminatory power for a dichotomous outcome (cured/uncured). Yet the conventional AUC cannot be directly used due to incompletely observed cure status. In this article, we proposed new estimates of the ROC curve and its AUC for predicting latent cure status in Cox proportional hazards (PH) cure models and transformation cure models. We developed explicit formulas to estimate sensitivity, specificity, the ROC and its AUC without requiring to know the patient cure status. We also developed EM type estimates to approximate sensitivity, specificity, ROC and AUC conditional on observed data. Numerical studies were used to assess their finite-sample performance of the proposed methods. Both methods are consistent and have similar efficiency as shown in our numerical studies. A melanoma dataset was used to demonstrate the utility of the proposed estimates of the ROC curve for the latent cure status. We also have developed an $$\mathtt{R}$$ R package called $$\mathtt {evacure}$$ evacure to efficiently compute the proposed estimates.

Suggested Citation

  • Yilong Zhang & Xiaoxia Han & Yongzhao Shao, 2021. "The ROC of Cox proportional hazards cure models with application in cancer studies," Lifetime Data Analysis: An International Journal Devoted to Statistical Methods and Applications for Time-to-Event Data, Springer, vol. 27(2), pages 195-215, April.
  • Handle: RePEc:spr:lifeda:v:27:y:2021:i:2:d:10.1007_s10985-021-09516-6
    DOI: 10.1007/s10985-021-09516-6
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    References listed on IDEAS

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    1. P. C. Lambert & P. W. Dickman & C. L. Weston & J. R. Thompson, 2010. "Estimating the cure fraction in population‐based cancer studies by using finite mixture models," Journal of the Royal Statistical Society Series C, Royal Statistical Society, vol. 59(1), pages 35-55, January.
    2. Liu Xinhua & Jin Zhezhen, 2009. "A Non-Parametric Approach to Scale Reduction for Uni-Dimensional Screening Scales," The International Journal of Biostatistics, De Gruyter, vol. 5(1), pages 1-22, January.
    3. D. Oakes, 1999. "Direct calculation of the information matrix via the EM," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 61(2), pages 479-482, April.
    4. Wenbin Lu, 2004. "On semiparametric transformation cure models," Biometrika, Biometrika Trust, vol. 91(2), pages 331-343, June.
    5. Yingwei Peng & Keith B. G. Dear, 2000. "A Nonparametric Mixture Model for Cure Rate Estimation," Biometrics, The International Biometric Society, vol. 56(1), pages 237-243, March.
    6. Judy P. Sy & Jeremy M. G. Taylor, 2000. "Estimation in a Cox Proportional Hazards Cure Model," Biometrics, The International Biometric Society, vol. 56(1), pages 227-236, March.
    7. Martin W. McIntosh & Margaret Sullivan Pepe, 2002. "Combining Several Screening Tests: Optimality of the Risk Score," Biometrics, The International Biometric Society, vol. 58(3), pages 657-664, September.
    8. Kani Chen, 2002. "Semiparametric analysis of transformation models with censored data," Biometrika, Biometrika Trust, vol. 89(3), pages 659-668, August.
    9. D. Zeng & D. Y. Lin, 2007. "Maximum likelihood estimation in semiparametric regression models with censored data," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 69(4), pages 507-564, September.
    10. Mithat Gonen & Glenn Heller, 2005. "Concordance probability and discriminatory power in proportional hazards regression," Biometrika, Biometrika Trust, vol. 92(4), pages 965-970, December.
    11. Junyi Zhang & Zhezhen Jin & Yongzhao Shao & Zhiliang Ying, 2018. "Statistical inference on transformation models: a self-induced smoothing approach," Journal of Nonparametric Statistics, Taylor & Francis Journals, vol. 30(2), pages 308-331, April.
    12. Wang, Antai & Zhang, Yilong & Shao, Yongzhao, 2017. "On the likelihood of mixture cure models," Statistics & Probability Letters, Elsevier, vol. 131(C), pages 51-55.
    13. Hong‐Bin Fang & Gang Li & Jianguo Sun, 2005. "Maximum Likelihood Estimation in a Semiparametric Logistic/Proportional‐Hazards Mixture Model," Scandinavian Journal of Statistics, Danish Society for Theoretical Statistics;Finnish Statistical Society;Norwegian Statistical Association;Swedish Statistical Association, vol. 32(1), pages 59-75, March.
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    1. Nasrin Borumandnia & Hassan Doosti & Amirhossein Jalali & Soheila Khodakarim & Jamshid Yazdani Charati & Mohamad Amin Pourhoseingholi & Atefeh Talebi & Shahram Agah, 2021. "Nomogram to Predict the Overall Survival of Colorectal Cancer Patients: A Multicenter National Study," IJERPH, MDPI, vol. 18(15), pages 1-11, July.

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