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Using Projection-Based Clustering to Find Distance- and Density-Based Clusters in High-Dimensional Data

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  • Michael C. Thrun

    (Philipps-Universität Marburg
    Philipps-University Marburg)

  • Alfred Ultsch

    (Philipps-Universität Marburg)

Abstract

For high-dimensional datasets in which clusters are formed by both distance and density structures (DDS), many clustering algorithms fail to identify these clusters correctly. This is demonstrated for 32 clustering algorithms using a suite of datasets which deliberately pose complex DDS challenges for clustering. In order to improve the structure finding and clustering in high-dimensional DDS datasets, projection-based clustering (PBC) is introduced. The coexistence of projection and clustering allows to explore DDS through a topographic map. This enables to estimate, first, if any cluster tendency exists and, second, the estimation of the number of clusters. A comparison showed that PBC is always able to find the correct cluster structure, while the performance of the best of the 32 clustering algorithms varies depending on the dataset.

Suggested Citation

  • Michael C. Thrun & Alfred Ultsch, 2021. "Using Projection-Based Clustering to Find Distance- and Density-Based Clusters in High-Dimensional Data," Journal of Classification, Springer;The Classification Society, vol. 38(2), pages 280-312, July.
  • Handle: RePEc:spr:jclass:v:38:y:2021:i:2:d:10.1007_s00357-020-09373-2
    DOI: 10.1007/s00357-020-09373-2
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    References listed on IDEAS

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    1. Glenn Milligan & Martha Cooper, 1988. "A study of standardization of variables in cluster analysis," Journal of Classification, Springer;The Classification Society, vol. 5(2), pages 181-204, September.
    2. Timmerman, Marieke E. & Ceulemans, Eva & Kiers, Henk A.L. & Vichi, Maurizio, 2010. "Factorial and reduced K-means reconsidered," Computational Statistics & Data Analysis, Elsevier, vol. 54(7), pages 1858-1871, July.
    3. Wehrens, Ron & Buydens, Lutgarde M. C., 2007. "Self- and Super-organizing Maps in R: The kohonen Package," Journal of Statistical Software, Foundation for Open Access Statistics, vol. 21(i05).
    4. Warren Torgerson, 1952. "Multidimensional scaling: I. Theory and method," Psychometrika, Springer;The Psychometric Society, vol. 17(4), pages 401-419, December.
    5. Michael C Thrun & Tino Gehlert & Alfred Ultsch, 2020. "Analyzing the fine structure of distributions," PLOS ONE, Public Library of Science, vol. 15(10), pages 1-20, October.
    6. Wei‐Chien Chang, 1983. "On Using Principal Components before Separating a Mixture of Two Multivariate Normal Distributions," Journal of the Royal Statistical Society Series C, Royal Statistical Society, vol. 32(3), pages 267-275, November.
    7. Vichi, Maurizio & Kiers, Henk A. L., 2001. "Factorial k-means analysis for two-way data," Computational Statistics & Data Analysis, Elsevier, vol. 37(1), pages 49-64, July.
    8. Douglas Steinley & Michael J. Brusco, 2007. "Initializing K-means Batch Clustering: A Critical Evaluation of Several Techniques," Journal of Classification, Springer;The Classification Society, vol. 24(1), pages 99-121, June.
    9. Evgenia Dimitriadou & Sara Dolničar & Andreas Weingessel, 2002. "An examination of indexes for determining the number of clusters in binary data sets," Psychometrika, Springer;The Psychometric Society, vol. 67(1), pages 137-159, March.
    10. Fraley C. & Raftery A.E., 2002. "Model-Based Clustering, Discriminant Analysis, and Density Estimation," Journal of the American Statistical Association, American Statistical Association, vol. 97, pages 611-631, June.
    11. Lawrence Hubert & Phipps Arabie, 1985. "Comparing partitions," Journal of Classification, Springer;The Classification Society, vol. 2(1), pages 193-218, December.
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