IDEAS home Printed from https://ideas.repec.org/a/spr/alstar/v102y2018i4d10.1007_s10182-018-0318-7.html
   My bibliography  Save this article

A modified generalized lasso algorithm to detect local spatial clusters for count data

Author

Listed:
  • Hosik Choi

    (Kyonggi University)

  • Eunjung Song

    (Inha University)

  • Seung-sik Hwang

    (Graduate School of Public Health, Seoul National University)

  • Woojoo Lee

    (Inha University)

Abstract

Detecting local spatial clusters for count data is an important task in spatial epidemiology. Two broad approaches—moving window and disease mapping methods—have been suggested in some of the literature to find clusters. However, the existing methods employ somewhat arbitrarily chosen tuning parameters, and the local clustering results are sensitive to the choices. In this paper, we propose a penalized likelihood method to overcome the limitations of existing local spatial clustering approaches for count data. We start with a Poisson regression model to accommodate any type of covariates, and formulate the clustering problem as a penalized likelihood estimation problem to find change points of intercepts in two-dimensional space. The cost of developing a new algorithm is minimized by modifying an existing least absolute shrinkage and selection operator algorithm. The computational details on the modifications are shown, and the proposed method is illustrated with Seoul tuberculosis data.

Suggested Citation

  • Hosik Choi & Eunjung Song & Seung-sik Hwang & Woojoo Lee, 2018. "A modified generalized lasso algorithm to detect local spatial clusters for count data," AStA Advances in Statistical Analysis, Springer;German Statistical Society, vol. 102(4), pages 537-563, October.
    • Handle: RePEc:spr:alstar:v:102:y:2018:i:4:d:10.1007_s10182-018-0318-7
    DOI: 10.1007/s10182-018-0318-7
    as

    Download full text from publisher

    File URL: http://link.springer.com/10.1007/s10182-018-0318-7
    File Function: Abstract
    Download Restriction: Access to the full text of the articles in this series is restricted.
    File URL: https://libkey.io/10.1007/s10182-018-0318-7?utm_source=ideas
    LibKey link: if access is restricted and if your library uses this service, LibKey will redirect you to where you can use your library subscription to access this item
    ---><---

    As the access to this document is restricted, you may want to search for a different version of it.

    References listed on IDEAS

    as
    1. Robert Tibshirani & Michael Saunders & Saharon Rosset & Ji Zhu & Keith Knight, 2005. "Sparsity and smoothness via the fused lasso," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 67(1), pages 91-108, February.
    2. Hunter D.R. & Lange K., 2004. "A Tutorial on MM Algorithms," The American Statistician, American Statistical Association, vol. 58, pages 30-37, February.
    3. Julian Besag & James Newell, 1991. "The Detection of Clusters in Rare Diseases," Journal of the Royal Statistical Society Series A, Royal Statistical Society, vol. 154(1), pages 143-155, January.
    4. Friedman, Jerome H. & Hastie, Trevor & Tibshirani, Rob, 2010. "Regularization Paths for Generalized Linear Models via Coordinate Descent," Journal of Statistical Software, Foundation for Open Access Statistics, vol. 33(i01).
    5. Julian Besag & Jeremy York & Annie Mollié, 1991. "Bayesian image restoration, with two applications in spatial statistics," Annals of the Institute of Statistical Mathematics, Springer;The Institute of Statistical Mathematics, vol. 43(1), pages 1-20, March.
    6. Nancy R. Zhang & David O. Siegmund, 2007. "A Modified Bayes Information Criterion with Applications to the Analysis of Comparative Genomic Hybridization Data," Biometrics, The International Biometric Society, vol. 63(1), pages 22-32, March.
    7. Fan J. & Li R., 2001. "Variable Selection via Nonconcave Penalized Likelihood and its Oracle Properties," Journal of the American Statistical Association, American Statistical Association, vol. 96, pages 1348-1360, December.
    Full references (including those not matched with items on IDEAS)

    Most related items

    These are the items that most often cite the same works as this one and are cited by the same works as this one.
    1. Tutz, Gerhard & Pößnecker, Wolfgang & Uhlmann, Lorenz, 2015. "Variable selection in general multinomial logit models," Computational Statistics & Data Analysis, Elsevier, vol. 82(C), pages 207-222.
    2. Loann David Denis Desboulets, 2018. "A Review on Variable Selection in Regression Analysis," Econometrics, MDPI, vol. 6(4), pages 1-27, November.
    3. Sakyajit Bhattacharya & Paul McNicholas, 2014. "A LASSO-penalized BIC for mixture model selection," Advances in Data Analysis and Classification, Springer;German Classification Society - Gesellschaft für Klassifikation (GfKl);Japanese Classification Society (JCS);Classification and Data Analysis Group of the Italian Statistical Society (CLADAG);International Federation of Classification Societies (IFCS), vol. 8(1), pages 45-61, March.
    4. Feng Hong & Lu Tian & Viswanath Devanarayan, 2023. "Improving the Robustness of Variable Selection and Predictive Performance of Regularized Generalized Linear Models and Cox Proportional Hazard Models," Mathematics, MDPI, vol. 11(3), pages 1-13, January.
    5. Centofanti, Fabio & Fontana, Matteo & Lepore, Antonio & Vantini, Simone, 2022. "Smooth LASSO estimator for the Function-on-Function linear regression model," Computational Statistics & Data Analysis, Elsevier, vol. 176(C).
    6. Pei Wang & Shunjie Chen & Sijia Yang, 2022. "Recent Advances on Penalized Regression Models for Biological Data," Mathematics, MDPI, vol. 10(19), pages 1-24, October.
    7. Matthias Weber & Martin Schumacher & Harald Binder, 2014. "Regularized Regression Incorporating Network Information: Simultaneous Estimation of Covariate Coefficients and Connection Signs," Tinbergen Institute Discussion Papers 14-089/I, Tinbergen Institute.
    8. Siwei Xia & Yuehan Yang & Hu Yang, 2022. "Sparse Laplacian Shrinkage with the Graphical Lasso Estimator for Regression Problems," TEST: An Official Journal of the Spanish Society of Statistics and Operations Research, Springer;Sociedad de Estadística e Investigación Operativa, vol. 31(1), pages 255-277, March.
    9. Howard D. Bondell & Brian J. Reich, 2009. "Simultaneous Factor Selection and Collapsing Levels in ANOVA," Biometrics, The International Biometric Society, vol. 65(1), pages 169-177, March.
    10. Matthew Pietrosanu & Jueyu Gao & Linglong Kong & Bei Jiang & Di Niu, 2021. "Advanced algorithms for penalized quantile and composite quantile regression," Computational Statistics, Springer, vol. 36(1), pages 333-346, March.
    11. Benjamin G. Stokell & Rajen D. Shah & Ryan J. Tibshirani, 2021. "Modelling high‐dimensional categorical data using nonconvex fusion penalties," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 83(3), pages 579-611, July.
    12. Chen, Shunjie & Yang, Sijia & Wang, Pei & Xue, Liugen, 2023. "Two-stage penalized algorithms via integrating prior information improve gene selection from omics data," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 628(C).
    13. Hoff, Peter D., 2017. "Lasso, fractional norm and structured sparse estimation using a Hadamard product parametrization," Computational Statistics & Data Analysis, Elsevier, vol. 115(C), pages 186-198.
    14. Md Showaib Rahman Sarker & Michael Pokojovy & Sangjin Kim, 2019. "On the Performance of Variable Selection and Classification via Rank-Based Classifier," Mathematics, MDPI, vol. 7(5), pages 1-16, May.
    15. Mkhadri, Abdallah & Ouhourane, Mohamed, 2013. "An extended variable inclusion and shrinkage algorithm for correlated variables," Computational Statistics & Data Analysis, Elsevier, vol. 57(1), pages 631-644.
    16. Fan, Jianqing & Jiang, Bai & Sun, Qiang, 2022. "Bayesian factor-adjusted sparse regression," Journal of Econometrics, Elsevier, vol. 230(1), pages 3-19.
    17. Yize Zhao & Matthias Chung & Brent A. Johnson & Carlos S. Moreno & Qi Long, 2016. "Hierarchical Feature Selection Incorporating Known and Novel Biological Information: Identifying Genomic Features Related to Prostate Cancer Recurrence," Journal of the American Statistical Association, Taylor & Francis Journals, vol. 111(516), pages 1427-1439, October.
    18. Hui Xiao & Yiguo Sun, 2020. "Forecasting the Returns of Cryptocurrency: A Model Averaging Approach," JRFM, MDPI, vol. 13(11), pages 1-15, November.
    19. Zhu Wang, 2022. "MM for penalized estimation," TEST: An Official Journal of the Spanish Society of Statistics and Operations Research, Springer;Sociedad de Estadística e Investigación Operativa, vol. 31(1), pages 54-75, March.
    20. Naimoli, Antonio, 2022. "Modelling the persistence of Covid-19 positivity rate in Italy," Socio-Economic Planning Sciences, Elsevier, vol. 82(PA).

    Corrections

    All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:spr:alstar:v:102:y:2018:i:4:d:10.1007_s10182-018-0318-7. See general information about how to correct material in RePEc.

    If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.

    If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .

    If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.

    For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: Sonal Shukla or Springer Nature Abstracting and Indexing (email available below). General contact details of provider: http://www.springer.com .

    Please note that corrections may take a couple of weeks to filter through the various RePEc services.

    IDEAS is a RePEc service. RePEc uses bibliographic data supplied by the respective publishers.