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Improving the usability of spatial point process methodology: an interdisciplinary dialogue between statistics and ecology

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  • Janine B. Illian

    (University of Saint Andrews)

  • David F. R. P. Burslem

    (University of Aberdeen)

Abstract

The last few decades have seen an increasing interest and strong development in spatial point process methodology, and associated software that facilitates model fitting has become available. A lot of this progress has made these approaches more accessible to users, through freely available software. However, in the ecological user community the methodology has only been slowly picked up despite its obvious relevance to the field. This paper reflects on this development, highlighting mutual benefits of interdisciplinary dialogue for both statistics and ecology. We detail the contribution point process methodology has made to research on biodiversity theory as a result of this dialogue and reflect on reasons for the slow take-up of the methodology. This primarily concerns the current lack of consideration of the usability of the approaches, which we discuss in detail, presenting current discussions as well as indicating future directions.

Suggested Citation

  • Janine B. Illian & David F. R. P. Burslem, 2017. "Improving the usability of spatial point process methodology: an interdisciplinary dialogue between statistics and ecology," AStA Advances in Statistical Analysis, Springer;German Statistical Society, vol. 101(4), pages 495-520, October.
    • Handle: RePEc:spr:alstar:v:101:y:2017:i:4:d:10.1007_s10182-017-0301-8
    DOI: 10.1007/s10182-017-0301-8
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    References listed on IDEAS

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    1. D. Simpson & J. B. Illian & F. Lindgren & S. H. Sørbye & H. Rue, 2016. "Going off grid: computationally efficient inference for log-Gaussian Cox processes," Biometrika, Biometrika Trust, vol. 103(1), pages 49-70.
    2. Sylvia Tippmann, 2015. "Programming tools: Adventures with R," Nature, Nature, vol. 517(7532), pages 109-110, January.
    3. Hodges, James S. & Reich, Brian J., 2010. "Adding Spatially-Correlated Errors Can Mess Up the Fixed Effect You Love," The American Statistician, American Statistical Association, vol. 64(4), pages 325-334.
    4. Pélissier, Raphaël & Goreaud, François, 2015. "ads Package for R: A Fast Unbiased Implementation of the K-function Family for Studying Spatial Point Patterns in Irregular-Shaped Sampling Windows," Journal of Statistical Software, Foundation for Open Access Statistics, vol. 63(i06).
    5. Jesper Møller & Rasmus P. Waagepetersen, 2007. "Modern Statistics for Spatial Point Processes," Scandinavian Journal of Statistics, Danish Society for Theoretical Statistics;Finnish Statistical Society;Norwegian Statistical Association;Swedish Statistical Association, vol. 34(4), pages 643-684, December.
    6. Håvard Rue & Sara Martino & Nicolas Chopin, 2009. "Approximate Bayesian inference for latent Gaussian models by using integrated nested Laplace approximations," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 71(2), pages 319-392, April.
    7. Lindgren, Finn & Rue, Håvard, 2015. "Bayesian Spatial Modelling with R-INLA," Journal of Statistical Software, Foundation for Open Access Statistics, vol. 63(i19).
    8. A. Baddeley & R. Turner & J. Møller & M. Hazelton, 2005. "Residual analysis for spatial point processes (with discussion)," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 67(5), pages 617-666, November.
    9. Brian J. Reich & James S. Hodges & Vesna Zadnik, 2006. "Effects of Residual Smoothing on the Posterior of the Fixed Effects in Disease-Mapping Models," Biometrics, The International Biometric Society, vol. 62(4), pages 1197-1206, December.
    10. Ephraim M. Hanks & Erin M. Schliep & Mevin B. Hooten & Jennifer A. Hoeting, 2015. "Restricted spatial regression in practice: geostatistical models, confounding, and robustness under model misspecification," Environmetrics, John Wiley & Sons, Ltd., vol. 26(4), pages 243-254, June.
    11. Baddeley, Adrian & Turner, Rolf, 2005. "spatstat: An R Package for Analyzing Spatial Point Patterns," Journal of Statistical Software, Foundation for Open Access Statistics, vol. 12(i06).
    12. Finn Lindgren & Håvard Rue & Johan Lindström, 2011. "An explicit link between Gaussian fields and Gaussian Markov random fields: the stochastic partial differential equation approach," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 73(4), pages 423-498, September.
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    Cited by:

    1. Roland Langrock & David L. Borchers, 2017. "Guest editors’ introduction to the special issue on “Ecological Statistics”," AStA Advances in Statistical Analysis, Springer;German Statistical Society, vol. 101(4), pages 345-347, October.

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