IDEAS home Printed from https://ideas.repec.org/a/nat/natcom/v9y2018i1d10.1038_s41467-018-06169-2.html
   My bibliography  Save this article

Towards exact molecular dynamics simulations with machine-learned force fields

Author

Listed:
  • Stefan Chmiela

    (Technische Universität Berlin)

  • Huziel E. Sauceda

    (Fritz-Haber-Institut der Max-Planck-Gesellschaft)

  • Klaus-Robert Müller

    (Technische Universität Berlin
    Korea University
    Max Planck Institute for Informatics)

  • Alexandre Tkatchenko

    (University of Luxembourg)

Abstract

Molecular dynamics (MD) simulations employing classical force fields constitute the cornerstone of contemporary atomistic modeling in chemistry, biology, and materials science. However, the predictive power of these simulations is only as good as the underlying interatomic potential. Classical potentials often fail to faithfully capture key quantum effects in molecules and materials. Here we enable the direct construction of flexible molecular force fields from high-level ab initio calculations by incorporating spatial and temporal physical symmetries into a gradient-domain machine learning (sGDML) model in an automatic data-driven way. The developed sGDML approach faithfully reproduces global force fields at quantum-chemical CCSD(T) level of accuracy and allows converged molecular dynamics simulations with fully quantized electrons and nuclei. We present MD simulations, for flexible molecules with up to a few dozen atoms and provide insights into the dynamical behavior of these molecules. Our approach provides the key missing ingredient for achieving spectroscopic accuracy in molecular simulations.

Suggested Citation

  • Stefan Chmiela & Huziel E. Sauceda & Klaus-Robert Müller & Alexandre Tkatchenko, 2018. "Towards exact molecular dynamics simulations with machine-learned force fields," Nature Communications, Nature, vol. 9(1), pages 1-10, December.
  • Handle: RePEc:nat:natcom:v:9:y:2018:i:1:d:10.1038_s41467-018-06169-2
    DOI: 10.1038/s41467-018-06169-2
    as

    Download full text from publisher

    File URL: https://www.nature.com/articles/s41467-018-06169-2
    File Function: Abstract
    Download Restriction: no

    File URL: https://libkey.io/10.1038/s41467-018-06169-2?utm_source=ideas
    LibKey link: if access is restricted and if your library uses this service, LibKey will redirect you to where you can use your library subscription to access this item
    ---><---

    Citations

    Citations are extracted by the CitEc Project, subscribe to its RSS feed for this item.
    as


    Cited by:

    1. Yuanming Bai & Leslie Vogt-Maranto & Mark E. Tuckerman & William J. Glover, 2022. "Machine learning the Hohenberg-Kohn map for molecular excited states," Nature Communications, Nature, vol. 13(1), pages 1-10, December.
    2. Albert Musaelian & Simon Batzner & Anders Johansson & Lixin Sun & Cameron J. Owen & Mordechai Kornbluth & Boris Kozinsky, 2023. "Learning local equivariant representations for large-scale atomistic dynamics," Nature Communications, Nature, vol. 14(1), pages 1-15, December.
    3. Simon Batzner & Albert Musaelian & Lixin Sun & Mario Geiger & Jonathan P. Mailoa & Mordechai Kornbluth & Nicola Molinari & Tess E. Smidt & Boris Kozinsky, 2022. "E(3)-equivariant graph neural networks for data-efficient and accurate interatomic potentials," Nature Communications, Nature, vol. 13(1), pages 1-11, December.
    4. David Buterez & Jon Paul Janet & Steven J. Kiddle & Dino Oglic & Pietro Lió, 2024. "Transfer learning with graph neural networks for improved molecular property prediction in the multi-fidelity setting," Nature Communications, Nature, vol. 15(1), pages 1-18, December.
    5. Huziel E. Sauceda & Luis E. Gálvez-González & Stefan Chmiela & Lauro Oliver Paz-Borbón & Klaus-Robert Müller & Alexandre Tkatchenko, 2022. "BIGDML—Towards accurate quantum machine learning force fields for materials," Nature Communications, Nature, vol. 13(1), pages 1-16, December.
    6. Adil Kabylda & Valentin Vassilev-Galindo & Stefan Chmiela & Igor Poltavsky & Alexandre Tkatchenko, 2023. "Efficient interatomic descriptors for accurate machine learning force fields of extended molecules," Nature Communications, Nature, vol. 14(1), pages 1-12, December.
    7. Niklas W. A. Gebauer & Michael Gastegger & Stefaan S. P. Hessmann & Klaus-Robert Müller & Kristof T. Schütt, 2022. "Inverse design of 3d molecular structures with conditional generative neural networks," Nature Communications, Nature, vol. 13(1), pages 1-11, December.
    8. Charlotte Loh & Thomas Christensen & Rumen Dangovski & Samuel Kim & Marin Soljačić, 2022. "Surrogate- and invariance-boosted contrastive learning for data-scarce applications in science," Nature Communications, Nature, vol. 13(1), pages 1-12, December.
    9. Yusong Wang & Tong Wang & Shaoning Li & Xinheng He & Mingyu Li & Zun Wang & Nanning Zheng & Bin Shao & Tie-Yan Liu, 2024. "Enhancing geometric representations for molecules with equivariant vector-scalar interactive message passing," Nature Communications, Nature, vol. 15(1), pages 1-13, December.

    More about this item

    Statistics

    Access and download statistics

    Corrections

    All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:nat:natcom:v:9:y:2018:i:1:d:10.1038_s41467-018-06169-2. See general information about how to correct material in RePEc.

    If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.

    We have no bibliographic references for this item. You can help adding them by using this form .

    If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.

    For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: Sonal Shukla or Springer Nature Abstracting and Indexing (email available below). General contact details of provider: http://www.nature.com .

    Please note that corrections may take a couple of weeks to filter through the various RePEc services.

    IDEAS is a RePEc service. RePEc uses bibliographic data supplied by the respective publishers.