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E(3)-equivariant graph neural networks for data-efficient and accurate interatomic potentials

Author

Listed:
  • Simon Batzner

    (Harvard University)

  • Albert Musaelian

    (Harvard University)

  • Lixin Sun

    (Harvard University)

  • Mario Geiger

    (École Polytechnique Fédérale de Lausanne
    Massachusetts Institute of Technology)

  • Jonathan P. Mailoa

    (Robert Bosch Research and Technology Center)

  • Mordechai Kornbluth

    (Robert Bosch Research and Technology Center)

  • Nicola Molinari

    (Harvard University)

  • Tess E. Smidt

    (Lawrence Berkeley National Laboratory
    Massachusetts Institute of Technology)

  • Boris Kozinsky

    (Harvard University
    Robert Bosch Research and Technology Center)

Abstract

This work presents Neural Equivariant Interatomic Potentials (NequIP), an E(3)-equivariant neural network approach for learning interatomic potentials from ab-initio calculations for molecular dynamics simulations. While most contemporary symmetry-aware models use invariant convolutions and only act on scalars, NequIP employs E(3)-equivariant convolutions for interactions of geometric tensors, resulting in a more information-rich and faithful representation of atomic environments. The method achieves state-of-the-art accuracy on a challenging and diverse set of molecules and materials while exhibiting remarkable data efficiency. NequIP outperforms existing models with up to three orders of magnitude fewer training data, challenging the widely held belief that deep neural networks require massive training sets. The high data efficiency of the method allows for the construction of accurate potentials using high-order quantum chemical level of theory as reference and enables high-fidelity molecular dynamics simulations over long time scales.

Suggested Citation

  • Simon Batzner & Albert Musaelian & Lixin Sun & Mario Geiger & Jonathan P. Mailoa & Mordechai Kornbluth & Nicola Molinari & Tess E. Smidt & Boris Kozinsky, 2022. "E(3)-equivariant graph neural networks for data-efficient and accurate interatomic potentials," Nature Communications, Nature, vol. 13(1), pages 1-11, December.
  • Handle: RePEc:nat:natcom:v:13:y:2022:i:1:d:10.1038_s41467-022-29939-5
    DOI: 10.1038/s41467-022-29939-5
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    References listed on IDEAS

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    1. Kristof T. Schütt & Farhad Arbabzadah & Stefan Chmiela & Klaus R. Müller & Alexandre Tkatchenko, 2017. "Quantum-chemical insights from deep tensor neural networks," Nature Communications, Nature, vol. 8(1), pages 1-8, April.
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    Cited by:

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    2. Li Zheng & Konstantinos Karapiperis & Siddhant Kumar & Dennis M. Kochmann, 2023. "Unifying the design space and optimizing linear and nonlinear truss metamaterials by generative modeling," Nature Communications, Nature, vol. 14(1), pages 1-14, December.
    3. Albert Musaelian & Simon Batzner & Anders Johansson & Lixin Sun & Cameron J. Owen & Mordechai Kornbluth & Boris Kozinsky, 2023. "Learning local equivariant representations for large-scale atomistic dynamics," Nature Communications, Nature, vol. 14(1), pages 1-15, December.
    4. Rama Oktavian & Ruben Goeminne & Lawson T. Glasby & Ping Song & Racheal Huynh & Omid Taheri Qazvini & Omid Ghaffari-Nik & Nima Masoumifard & Joan L. Cordiner & Pierre Hovington & Veronique Speybroeck , 2024. "Gas adsorption and framework flexibility of CALF-20 explored via experiments and simulations," Nature Communications, Nature, vol. 15(1), pages 1-10, December.
    5. T. M. Linker & A. Krishnamoorthy & L. L. Daemen & A. J. Ramirez-Cuesta & K. Nomura & A. Nakano & Y. Q. Cheng & W. R. Hicks & A. I. Kolesnikov & P. D. Vashishta, 2024. "Neutron scattering and neural-network quantum molecular dynamics investigation of the vibrations of ammonia along the solid-to-liquid transition," Nature Communications, Nature, vol. 15(1), pages 1-12, December.
    6. Adil Kabylda & Valentin Vassilev-Galindo & Stefan Chmiela & Igor Poltavsky & Alexandre Tkatchenko, 2023. "Efficient interatomic descriptors for accurate machine learning force fields of extended molecules," Nature Communications, Nature, vol. 14(1), pages 1-12, December.
    7. Chao Liang & Yilimiranmu Rouzhahong & Caiyuan Ye & Chong Li & Biao Wang & Huashan Li, 2023. "Material symmetry recognition and property prediction accomplished by crystal capsule representation," Nature Communications, Nature, vol. 14(1), pages 1-11, December.
    8. Yaolong Zhang & Bin Jiang, 2023. "Universal machine learning for the response of atomistic systems to external fields," Nature Communications, Nature, vol. 14(1), pages 1-11, December.
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    10. Lucien F. Krapp & Luciano A. Abriata & Fabio Cortés Rodriguez & Matteo Dal Peraro, 2023. "PeSTo: parameter-free geometric deep learning for accurate prediction of protein binding interfaces," Nature Communications, Nature, vol. 14(1), pages 1-11, December.
    11. Charlotte Loh & Thomas Christensen & Rumen Dangovski & Samuel Kim & Marin Soljačić, 2022. "Surrogate- and invariance-boosted contrastive learning for data-scarce applications in science," Nature Communications, Nature, vol. 13(1), pages 1-12, December.
    12. Xiaoxun Gong & He Li & Nianlong Zou & Runzhang Xu & Wenhui Duan & Yong Xu, 2023. "General framework for E(3)-equivariant neural network representation of density functional theory Hamiltonian," Nature Communications, Nature, vol. 14(1), pages 1-10, December.
    13. Yusong Wang & Tong Wang & Shaoning Li & Xinheng He & Mingyu Li & Zun Wang & Nanning Zheng & Bin Shao & Tie-Yan Liu, 2024. "Enhancing geometric representations for molecules with equivariant vector-scalar interactive message passing," Nature Communications, Nature, vol. 15(1), pages 1-13, December.

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