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Structural basis for the self-recognition of sDSCAM in Chelicerata

Author

Listed:
  • Jie Cheng

    (Sichuan University)

  • Yamei Yu

    (West China Hospital, Sichuan University, and Collaborative Innovation Center of Biotherapy)

  • Xingyu Wang

    (West China Hospital, Sichuan University, and Collaborative Innovation Center of Biotherapy)

  • Xi Zheng

    (Sichuan University
    Sichuan University)

  • Ting Liu

    (West China Hospital, Sichuan University, and Collaborative Innovation Center of Biotherapy)

  • Daojun Hu

    (West China Hospital, Sichuan University, and Collaborative Innovation Center of Biotherapy)

  • Yongfeng Jin

    (Zhejiang University)

  • Ying Lai

    (Sichuan University)

  • Tian-Min Fu

    (The Ohio State University
    The Ohio State University Comprehensive Cancer Center)

  • Qiang Chen

    (West China Hospital, Sichuan University, and Collaborative Innovation Center of Biotherapy)

Abstract

To create a functional neural circuit, neurons develop a molecular identity to discriminate self from non-self. The invertebrate Dscam family and vertebrate Pcdh family are implicated in determining synaptic specificity. Recently identified in Chelicerata, a shortened Dscam (sDscam) has been shown to resemble the isoform-generating characters of both Dscam and Pcdh and represent an evolutionary transition. Here we presented the molecular details of sDscam self-recognition via both trans and cis interactions using X-ray crystallographic data and functional assays. Based on our results, we proposed a molecular zipper model for the assemblies of sDscam to mediate cell-cell recognition. In this model, sDscam utilized FNIII domain to form side-by-side interactions with neighboring molecules in the same cell while established hand-in-hand interactions via Ig1 domain with molecules from another cell around. Together, our study provided a framework for understanding the assembly, recognition, and evolution of sDscam.

Suggested Citation

  • Jie Cheng & Yamei Yu & Xingyu Wang & Xi Zheng & Ting Liu & Daojun Hu & Yongfeng Jin & Ying Lai & Tian-Min Fu & Qiang Chen, 2023. "Structural basis for the self-recognition of sDSCAM in Chelicerata," Nature Communications, Nature, vol. 14(1), pages 1-12, December.
  • Handle: RePEc:nat:natcom:v:14:y:2023:i:1:d:10.1038_s41467-023-38205-1
    DOI: 10.1038/s41467-023-38205-1
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    1. Kathryn Tunyasuvunakool & Jonas Adler & Zachary Wu & Tim Green & Michal Zielinski & Augustin Žídek & Alex Bridgland & Andrew Cowie & Clemens Meyer & Agata Laydon & Sameer Velankar & Gerard J. Kleywegt, 2021. "Highly accurate protein structure prediction for the human proteome," Nature, Nature, vol. 596(7873), pages 590-596, August.
    2. Tom Maniatis & Bosiljka Tasic, 2002. "Alternative pre-mRNA splicing and proteome expansion in metazoans," Nature, Nature, vol. 418(6894), pages 236-243, July.
    3. Julia Brasch & Kerry M. Goodman & Alex J. Noble & Micah Rapp & Seetha Mannepalli & Fabiana Bahna & Venkata P. Dandey & Tristan Bepler & Bonnie Berger & Tom Maniatis & Clinton S. Potter & Bridget Carra, 2019. "Visualization of clustered protocadherin neuronal self-recognition complexes," Nature, Nature, vol. 569(7755), pages 280-283, May.
    4. John Jumper & Richard Evans & Alexander Pritzel & Tim Green & Michael Figurnov & Olaf Ronneberger & Kathryn Tunyasuvunakool & Russ Bates & Augustin Žídek & Anna Potapenko & Alex Bridgland & Clemens Me, 2021. "Highly accurate protein structure prediction with AlphaFold," Nature, Nature, vol. 596(7873), pages 583-589, August.
    5. Julie L. Lefebvre & Dimitar Kostadinov & Weisheng V. Chen & Tom Maniatis & Joshua R. Sanes, 2012. "Protocadherins mediate dendritic self-avoidance in the mammalian nervous system," Nature, Nature, vol. 488(7412), pages 517-521, August.
    6. Daisuke Hattori & Yi Chen & Benjamin J. Matthews & Lukasz Salwinski & Chiara Sabatti & Wesley B. Grueber & S. Lawrence Zipursky, 2009. "Robust discrimination between self and non-self neurites requires thousands of Dscam1 isoforms," Nature, Nature, vol. 461(7264), pages 644-648, October.
    7. Yuan Yue & Yijun Meng & Hongru Ma & Shouqing Hou & Guozheng Cao & Weiling Hong & Yang Shi & Pengjuan Guo & Baoping Liu & Feng Shi & Yun Yang & Yongfeng Jin, 2016. "A large family of Dscam genes with tandemly arrayed 5′ cassettes in Chelicerata," Nature Communications, Nature, vol. 7(1), pages 1-12, September.
    8. Rob Meijers & Roland Puettmann-Holgado & Georgios Skiniotis & Jin-huan Liu & Thomas Walz & Jia-huai Wang & Dietmar Schmucker, 2007. "Structural basis of Dscam isoform specificity," Nature, Nature, vol. 449(7161), pages 487-491, September.
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