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Structural and dynamic insights into supra-physiological activation and allosteric modulation of a muscarinic acetylcholine receptor

Author

Listed:
  • Jun Xu

    (Stanford University School of Medicine
    Tsinghua University)

  • Qinggong Wang

    (Chinese University of Hong Kong
    University of Science and Technology of China)

  • Harald Hübner

    (Friedrich-Alexander University)

  • Yunfei Hu

    (Peking University
    Innovation Academy for Precision Measurement Science and Technology, CAS)

  • Xiaogang Niu

    (Peking University)

  • Haoqing Wang

    (Stanford University School of Medicine)

  • Shoji Maeda

    (Stanford University School of Medicine
    Medical School, University of Michigan 1150 Medical Center Dr., 1315 Medical Science Research Bldg III)

  • Asuka Inoue

    (Tohoku University)

  • Yuyong Tao

    (University of Science and Technology of China)

  • Peter Gmeiner

    (Friedrich-Alexander University)

  • Yang Du

    (Chinese University of Hong Kong)

  • Changwen Jin

    (Peking University)

  • Brian K. Kobilka

    (Stanford University School of Medicine)

Abstract

The M2 muscarinic receptor (M2R) is a prototypical G-protein-coupled receptor (GPCR) that serves as a model system for understanding GPCR regulation by both orthosteric and allosteric ligands. Here, we investigate the mechanisms governing M2R signaling versatility using cryo-electron microscopy (cryo-EM) and NMR spectroscopy, focusing on the physiological agonist acetylcholine and a supra-physiological agonist iperoxo, as well as a positive allosteric modulator LY2119620. These studies reveal that acetylcholine stabilizes a more heterogeneous M2R-G-protein complex than iperoxo, where two conformers with distinctive G-protein orientations were determined. We find that LY2119620 increases the affinity for both agonists, but differentially modulates agonists efficacy in G-protein and β-arrestin pathways. Structural and spectroscopic analysis suggest that LY211620 stabilizes distinct intracellular conformational ensembles from agonist-bound M2R, which may enhance β-arrestin recruitment while impairing G-protein activation. These results highlight the role of conformational dynamics in the complex signaling behavior of GPCRs, and could facilitate design of better drugs.

Suggested Citation

  • Jun Xu & Qinggong Wang & Harald Hübner & Yunfei Hu & Xiaogang Niu & Haoqing Wang & Shoji Maeda & Asuka Inoue & Yuyong Tao & Peter Gmeiner & Yang Du & Changwen Jin & Brian K. Kobilka, 2023. "Structural and dynamic insights into supra-physiological activation and allosteric modulation of a muscarinic acetylcholine receptor," Nature Communications, Nature, vol. 14(1), pages 1-16, December.
  • Handle: RePEc:nat:natcom:v:14:y:2023:i:1:d:10.1038_s41467-022-35726-z
    DOI: 10.1038/s41467-022-35726-z
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    as
    1. Heng Liu & Dapeng Sun & Alexander Myasnikov & Marjorie Damian & Jean-Louis Baneres & Ji Sun & Cheng Zhang, 2021. "Structural basis of human ghrelin receptor signaling by ghrelin and the synthetic agonist ibutamoren," Nature Communications, Nature, vol. 12(1), pages 1-8, December.
    2. Yu-Qi Ping & Chunyou Mao & Peng Xiao & Ru-Jia Zhao & Yi Jiang & Zhao Yang & Wen-Tao An & Dan-Dan Shen & Fan Yang & Huibing Zhang & Changxiu Qu & Qingya Shen & Caiping Tian & Zi-jian Li & Shaolong Li &, 2021. "Structures of the glucocorticoid-bound adhesion receptor GPR97–Go complex," Nature, Nature, vol. 589(7843), pages 620-626, January.
    3. Kazuko Haga & Andrew C. Kruse & Hidetsugu Asada & Takami Yurugi-Kobayashi & Mitsunori Shiroishi & Cheng Zhang & William I. Weis & Tetsuji Okada & Brian K. Kobilka & Tatsuya Haga & Takuya Kobayashi, 2012. "Structure of the human M2 muscarinic acetylcholine receptor bound to an antagonist," Nature, Nature, vol. 482(7386), pages 547-551, February.
    4. David M. Thal & Bingfa Sun & Dan Feng & Vindhya Nawaratne & Katie Leach & Christian C. Felder & Mark G. Bures & David A. Evans & William I. Weis & Priti Bachhawat & Tong Sun Kobilka & Patrick M. Sexto, 2016. "Crystal structures of the M1 and M4 muscarinic acetylcholine receptors," Nature, Nature, vol. 531(7594), pages 335-340, March.
    5. Youwen Zhuang & Heng Liu & X. Edward Zhou & Ravi Kumar Verma & Parker W. de Waal & Wonjo Jang & Ting-Hai Xu & Lei Wang & Xing Meng & Gongpu Zhao & Yanyong Kang & Karsten Melcher & Hao Fan & Nevin A. L, 2020. "Structure of formylpeptide receptor 2-Gi complex reveals insights into ligand recognition and signaling," Nature Communications, Nature, vol. 11(1), pages 1-12, December.
    6. Chuan Hong & Noel J. Byrne & Beata Zamlynny & Srivanya Tummala & Li Xiao & Jennifer M. Shipman & Andrea T. Partridge & Christina Minnick & Michael J. Breslin & Michael T. Rudd & Shawn J. Stachel & Van, 2021. "Structures of active-state orexin receptor 2 rationalize peptide and small-molecule agonist recognition and receptor activation," Nature Communications, Nature, vol. 12(1), pages 1-11, December.
    7. Harald Hübner & Tamara Schellhorn & Marie Gienger & Carolin Schaab & Jonas Kaindl & Laurin Leeb & Timothy Clark & Dorothee Möller & Peter Gmeiner, 2016. "Structure-guided development of heterodimer-selective GPCR ligands," Nature Communications, Nature, vol. 7(1), pages 1-12, November.
    8. Shoji Maeda & Antoine Koehl & Hugues Matile & Hongli Hu & Daniel Hilger & Gebhard F. X. Schertler & Aashish Manglik & Georgios Skiniotis & Roger J. P. Dawson & Brian K. Kobilka, 2018. "Development of an antibody fragment that stabilizes GPCR/G-protein complexes," Nature Communications, Nature, vol. 9(1), pages 1-9, December.
    9. Shin Isogai & Xavier Deupi & Christian Opitz & Franziska M. Heydenreich & Ching-Ju Tsai & Florian Brueckner & Gebhard F. X. Schertler & Dmitry B. Veprintsev & Stephan Grzesiek, 2016. "Backbone NMR reveals allosteric signal transduction networks in the β1-adrenergic receptor," Nature, Nature, vol. 530(7589), pages 237-241, February.
    10. G. Glenn Gregorio & Matthieu Masureel & Daniel Hilger & Daniel S. Terry & Manuel Juette & Hong Zhao & Zhou Zhou & Jose Manuel Perez-Aguilar & Maria Hauge & Signe Mathiasen & Jonathan A. Javitch & Hare, 2017. "Single-molecule analysis of ligand efficacy in β2AR–G-protein activation," Nature, Nature, vol. 547(7661), pages 68-73, July.
    11. Ron O. Dror & Hillary F. Green & Celine Valant & David W. Borhani & James R. Valcourt & Albert C. Pan & Daniel H. Arlow & Meritxell Canals & J. Robert Lane & Raphaël Rahmani & Jonathan B. Baell & Patr, 2013. "Structural basis for modulation of a G-protein-coupled receptor by allosteric drugs," Nature, Nature, vol. 503(7475), pages 295-299, November.
    12. Dean P. Staus & Hongli Hu & Michael J. Robertson & Alissa L. W. Kleinhenz & Laura M. Wingler & William D. Capel & Naomi R. Latorraca & Robert J. Lefkowitz & Georgios Skiniotis, 2020. "Structure of the M2 muscarinic receptor–β-arrestin complex in a lipid nanodisc," Nature, Nature, vol. 579(7798), pages 297-302, March.
    13. J. Niclas Frei & Richard W. Broadhurst & Mark J. Bostock & Andras Solt & Andrew J. Y. Jones & Florian Gabriel & Aditi Tandale & Binesh Shrestha & Daniel Nietlispach, 2020. "Conformational plasticity of ligand-bound and ternary GPCR complexes studied by 19F NMR of the β1-adrenergic receptor," Nature Communications, Nature, vol. 11(1), pages 1-14, December.
    14. Brian T. DeVree & Jacob P. Mahoney & Gisselle A. Vélez-Ruiz & Soren G. F. Rasmussen & Adam J. Kuszak & Elin Edwald & Juan-Jose Fung & Aashish Manglik & Matthieu Masureel & Yang Du & Rachel A. Matt & E, 2016. "Allosteric coupling from G protein to the agonist-binding pocket in GPCRs," Nature, Nature, vol. 535(7610), pages 182-186, July.
    15. Yutaro Shiraishi & Mei Natsume & Yutaka Kofuku & Shunsuke Imai & Kunio Nakata & Toshimi Mizukoshi & Takumi Ueda & Hideo Iwaï & Ichio Shimada, 2018. "Phosphorylation-induced conformation of β2-adrenoceptor related to arrestin recruitment revealed by NMR," Nature Communications, Nature, vol. 9(1), pages 1-10, December.
    16. Hideaki E. Kato & Yan Zhang & Hongli Hu & Carl-Mikael Suomivuori & Francois Marie Ngako Kadji & Junken Aoki & Kaavya Krishna Kumar & Rasmus Fonseca & Daniel Hilger & Weijiao Huang & Naomi R. Latorraca, 2019. "Conformational transitions of a neurotensin receptor 1–Gi1 complex," Nature, Nature, vol. 572(7767), pages 80-85, August.
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