The Heterochromatin protein 1 is a regulator in RNA splicing precision deficient in ulcerative colitis
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DOI: 10.1038/s41467-022-34556-3
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- Adam L. Haber & Moshe Biton & Noga Rogel & Rebecca H. Herbst & Karthik Shekhar & Christopher Smillie & Grace Burgin & Toni M. Delorey & Michael R. Howitt & Yarden Katz & Itay Tirosh & Semir Beyaz & Da, 2017. "A single-cell survey of the small intestinal epithelium," Nature, Nature, vol. 551(7680), pages 333-339, November.
- Tomasz Chelmicki & Emeline Roger & Aurélie Teissandier & Mathilde Dura & Lorraine Bonneville & Sofia Rucli & François Dossin & Camille Fouassier & Sonia Lameiras & Deborah Bourc’his, 2021. "m6A RNA methylation regulates the fate of endogenous retroviruses," Nature, Nature, vol. 591(7849), pages 312-316, March.
- Kenichi Yoshida & Masashi Sanada & Yuichi Shiraishi & Daniel Nowak & Yasunobu Nagata & Ryo Yamamoto & Yusuke Sato & Aiko Sato-Otsubo & Ayana Kon & Masao Nagasaki & George Chalkidis & Yutaka Suzuki & M, 2011. "Frequent pathway mutations of splicing machinery in myelodysplasia," Nature, Nature, vol. 478(7367), pages 64-69, October.
- Ruicong Wang & Hongda Li & Jianfeng Wu & Zhi-Yu Cai & Baizhou Li & Hengxiao Ni & Xingfeng Qiu & Hui Chen & Wei Liu & Zhang-Hua Yang & Min Liu & Jin Hu & Yaoji Liang & Ping Lan & Jiahuai Han & Wei Mo, 2020. "Gut stem cell necroptosis by genome instability triggers bowel inflammation," Nature, Nature, vol. 580(7803), pages 386-390, April.
- S. Sanulli & M. J. Trnka & V. Dharmarajan & R. W. Tibble & B. D. Pascal & A. L. Burlingame & P. R. Griffin & J. D. Gross & G. J. Narlikar, 2019. "HP1 reshapes nucleosome core to promote phase separation of heterochromatin," Nature, Nature, vol. 575(7782), pages 390-394, November.
- Yael Haberman & Rebekah Karns & Phillip J. Dexheimer & Melanie Schirmer & Judith Somekh & Ingrid Jurickova & Tzipi Braun & Elizabeth Novak & Laura Bauman & Margaret H. Collins & Angela Mo & Michael J., 2019. "Ulcerative colitis mucosal transcriptomes reveal mitochondriopathy and personalized mechanisms underlying disease severity and treatment response," Nature Communications, Nature, vol. 10(1), pages 1-13, December.
- Guang-Hui Liu & Basam Z. Barkho & Sergio Ruiz & Dinh Diep & Jing Qu & Sheng-Lian Yang & Athanasia D. Panopoulos & Keiichiro Suzuki & Leo Kurian & Christopher Walsh & James Thompson & Stephanie Boue & , 2011. "Recapitulation of premature ageing with iPSCs from Hutchinson–Gilford progeria syndrome," Nature, Nature, vol. 472(7342), pages 221-225, April.
- Irmgard U. Haussmann & Zsuzsanna Bodi & Eugenio Sanchez-Moran & Nigel P. Mongan & Nathan Archer & Rupert G. Fray & Matthias Soller, 2016. "m6A potentiates Sxl alternative pre-mRNA splicing for robust Drosophila sex determination," Nature, Nature, vol. 540(7632), pages 301-304, December.
- Maria Eriksson & W. Ted Brown & Leslie B. Gordon & Michael W. Glynn & Joel Singer & Laura Scott & Michael R. Erdos & Christiane M. Robbins & Tracy Y. Moses & Peter Berglund & Amalia Dutra & Evgenia Pa, 2003. "Recurrent de novo point mutations in lamin A cause Hutchinson–Gilford progeria syndrome," Nature, Nature, vol. 423(6937), pages 293-298, May.
- Soren J. Nielsen & Robert Schneider & Uta-Maria Bauer & Andrew J. Bannister & Ashby Morrison & Donal O'Carroll & Ron Firestein & Michael Cleary & Thomas Jenuwein & Rafael E. Herrera & Tony Kouzarides, 2001. "Rb targets histone H3 methylation and HP1 to promoters," Nature, Nature, vol. 412(6846), pages 561-565, August.
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