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Monomeric prefusion structure of an extremophile gamete fusogen and stepwise formation of the postfusion trimeric state

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  • Juan Feng

    (Boston Children’s Hospital
    Department of Biological Chemistry and Molecular Pharmacology and Harvard Medical School)

  • Xianchi Dong

    (Boston Children’s Hospital
    Department of Biological Chemistry and Molecular Pharmacology and Harvard Medical School
    Nanjing University)

  • Yang Su

    (Boston Children’s Hospital
    Department of Biological Chemistry and Molecular Pharmacology and Harvard Medical School
    Harvard Medical School)

  • Chafen Lu

    (Boston Children’s Hospital
    Department of Biological Chemistry and Molecular Pharmacology and Harvard Medical School)

  • Timothy A. Springer

    (Boston Children’s Hospital
    Department of Biological Chemistry and Molecular Pharmacology and Harvard Medical School)

Abstract

Here, we study the gamete fusogen HAP2 from Cyanidioschyzon merolae (Cyani), an extremophile red algae that grows at acidic pH at 45 °C. HAP2 has a trimeric postfusion structure with similarity to viral class II fusion proteins, but its prefusion structure has been elusive. The crystal structure of a monomeric prefusion state of Cyani HAP2 shows it is highly extended with three domains in the order D2, D1, and D3. Three hydrophobic fusion loops at the tip of D2 are each required for postfusion state formation. We followed by negative stain electron microscopy steps in the process of detergent micelle-stimulated postfusion state formation. In an intermediate state, two or three linear HAP2 monomers associate at the end of D2 bearing its fusion loops. Subsequently, D2 and D1 line the core of a trimer and D3 folds back over the exterior of D1 and D2. D3 is not required for formation of intermediate or postfusion-like states.

Suggested Citation

  • Juan Feng & Xianchi Dong & Yang Su & Chafen Lu & Timothy A. Springer, 2022. "Monomeric prefusion structure of an extremophile gamete fusogen and stepwise formation of the postfusion trimeric state," Nature Communications, Nature, vol. 13(1), pages 1-11, December.
  • Handle: RePEc:nat:natcom:v:13:y:2022:i:1:d:10.1038_s41467-022-31744-z
    DOI: 10.1038/s41467-022-31744-z
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    References listed on IDEAS

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    1. Kathryn Tunyasuvunakool & Jonas Adler & Zachary Wu & Tim Green & Michal Zielinski & Augustin Žídek & Alex Bridgland & Andrew Cowie & Clemens Meyer & Agata Laydon & Sameer Velankar & Gerard J. Kleywegt, 2021. "Highly accurate protein structure prediction for the human proteome," Nature, Nature, vol. 596(7873), pages 590-596, August.
    2. John Jumper & Richard Evans & Alexander Pritzel & Tim Green & Michael Figurnov & Olaf Ronneberger & Kathryn Tunyasuvunakool & Russ Bates & Augustin Žídek & Anna Potapenko & Alex Bridgland & Clemens Me, 2021. "Highly accurate protein structure prediction with AlphaFold," Nature, Nature, vol. 596(7873), pages 583-589, August.
    3. Motomichi Matsuzaki & Osami Misumi & Tadasu Shin-i & Shinichiro Maruyama & Manabu Takahara & Shin-ya Miyagishima & Toshiyuki Mori & Keiji Nishida & Fumi Yagisawa & Keishin Nishida & Yamato Yoshida & Y, 2004. "Genome sequence of the ultrasmall unicellular red alga Cyanidioschyzon merolae 10D," Nature, Nature, vol. 428(6983), pages 653-657, April.
    4. Jun Zhang & Jennifer F. Pinello & Ignacio Fernández & Eduard Baquero & Juliette Fedry & Félix A. Rey & William J. Snell, 2021. "Species-specific gamete recognition initiates fusion-driving trimer formation by conserved fusogen HAP2," Nature Communications, Nature, vol. 12(1), pages 1-12, December.
    5. David Moi & Shunsuke Nishio & Xiaohui Li & Clari Valansi & Mauricio Langleib & Nicolas G. Brukman & Kateryna Flyak & Christophe Dessimoz & Daniele de Sanctis & Kathryn Tunyasuvunakool & John Jumper & , 2022. "Discovery of archaeal fusexins homologous to eukaryotic HAP2/GCS1 gamete fusion proteins," Nature Communications, Nature, vol. 13(1), pages 1-18, December.
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