IDEAS home Printed from https://ideas.repec.org/a/gam/jijerp/v16y2019i16p2912-d257549.html
   My bibliography  Save this article

Evaluating Latent Tuberculosis Infection Test Performance Using Latent Class Analysis in a TB and HIV Endemic Setting

Author

Listed:
  • Shahieda Adams

    (School of Public Health and Family Medicine, Division of Occupational Medicine, University of Cape Town, Observatory 7925, South Africa)

  • Rodney Ehrlich

    (School of Public Health and Family Medicine, Division of Occupational Medicine, University of Cape Town, Observatory 7925, South Africa)

  • Roslynn Baatjies

    (Department of Environmental and Occupational Studies, Faculty of Applied Sciences, Cape Peninsula University of Technology, Cape Town 8000, South Africa)

  • Nandini Dendukuri

    (Division of Clinical Epidemiology, McGill University Health Centre—Research Institute, Montreal, QC H4A 3J1, Canada)

  • Zhuoyu Wang

    (Division of Clinical Epidemiology, McGill University Health Centre—Research Institute, Montreal, QC H4A 3J1, Canada)

  • Keertan Dheda

    (Centre for Lung Infection and Immunity, Division of Pulmonology, Department of Medicine and UCT Lung Institute & South African MRC/UCT Centre for the Study of Antimicrobial Resistance, University of Cape Town, Observatory, Cape Town 7925, South Africa
    Faculty of Infectious and Tropical Diseases, Department of Immunology and Infection, London School of Hygiene and Tropical Medicine, London WC1E 7HT, UK)

Abstract

Background: Given the lack of a gold standard for latent tuberculosis infection (LTBI) and paucity of performance data from endemic settings, we compared test performance of the tuberculin skin test (TST) and two interferon-gamma-release assays (IGRAs) among health-care workers (HCWs) using latent class analysis. The study was conducted in Cape Town, South Africa, a tuberculosis and human immunodeficiency virus (HIV) endemic setting Methods: 505 HCWs were screened for LTBI using TST, QuantiFERON-gold-in-tube (QFT-GIT) and T-SPOT.TB. A latent class model utilizing prior information on test characteristics was used to estimate test performance. Results: LTBI prevalence (95% credible interval) was 81% (71–88%). TST (10 mm cut-point) had highest sensitivity (93% (90–96%)) but lowest specificity (57%, (43–71%)). QFT-GIT sensitivity was 80% (74–91%) and specificity 96% (94–98%), and for TSPOT.TB, 74% (67–84%) and 96% (89–99%) respectively. Positive predictive values were high for IGRAs (90%) and TST (99%). All tests displayed low negative predictive values (range 47–66%). A composite rule using both TST and QFT-GIT greatly improved negative predictive value to 90% (range 80–97%). Conclusion: In an endemic setting a positive TST or IGRA was highly predictive of LTBI, while a combination of TST and IGRA had high rule-out value. These data inform the utility of LTBI-related immunodiagnostic tests in TB and HIV endemic settings.

Suggested Citation

  • Shahieda Adams & Rodney Ehrlich & Roslynn Baatjies & Nandini Dendukuri & Zhuoyu Wang & Keertan Dheda, 2019. "Evaluating Latent Tuberculosis Infection Test Performance Using Latent Class Analysis in a TB and HIV Endemic Setting," IJERPH, MDPI, vol. 16(16), pages 1-11, August.
  • Handle: RePEc:gam:jijerp:v:16:y:2019:i:16:p:2912-:d:257549
    as

    Download full text from publisher

    File URL: https://www.mdpi.com/1660-4601/16/16/2912/pdf
    Download Restriction: no

    File URL: https://www.mdpi.com/1660-4601/16/16/2912/
    Download Restriction: no
    ---><---

    References listed on IDEAS

    as
    1. Nandini Dendukuri & Lawrence Joseph, 2001. "Bayesian Approaches to Modeling the Conditional Dependence Between Multiple Diagnostic Tests," Biometrics, The International Biometric Society, vol. 57(1), pages 158-167, March.
    Full references (including those not matched with items on IDEAS)

    Most related items

    These are the items that most often cite the same works as this one and are cited by the same works as this one.
    1. Nandini Dendukuri & Ian Schiller & Lawrence Joseph & Madhukar Pai, 2012. "Bayesian Meta-Analysis of the Accuracy of a Test for Tuberculous Pleuritis in the Absence of a Gold Standard Reference," Biometrics, The International Biometric Society, vol. 68(4), pages 1285-1293, December.
    2. Adam Branscum & Timothy Hanson & Ian Gardner, 2008. "Bayesian non-parametric models for regional prevalence estimation," Journal of Applied Statistics, Taylor & Francis Journals, vol. 35(5), pages 567-582.
    3. Geoffrey Jones & Wesley O. Johnson, 2016. "A Bayesian Superpopulation Approach to Inference for Finite Populations Based on Imperfect Diagnostic Outcomes," Journal of Agricultural, Biological and Environmental Statistics, Springer;The International Biometric Society;American Statistical Association, vol. 21(2), pages 314-327, June.
    4. Hae-Young Kim & Michael G. Hudgens & Jonathan M. Dreyfuss & Daniel J. Westreich & Christopher D. Pilcher, 2007. "Comparison of Group Testing Algorithms for Case Identification in the Presence of Test Error," Biometrics, The International Biometric Society, vol. 63(4), pages 1152-1163, December.
    5. Fabio Principato & Angela Vullo & Domenica Matranga, 2010. "On implementation of the Gibbs sampler for estimating the accuracy of multiple diagnostic tests," Journal of Applied Statistics, Taylor & Francis Journals, vol. 37(8), pages 1335-1354.
    6. O’Neill, Donal, 2015. "Measuring obesity in the absence of a gold standard," Economics & Human Biology, Elsevier, vol. 17(C), pages 116-128.
    7. Leandro García Barrado & Els Coart & Tomasz Burzykowski, 2017. "Estimation of diagnostic accuracy of a combination of continuous biomarkers allowing for conditional dependence between the biomarkers and the imperfect reference-test," Biometrics, The International Biometric Society, vol. 73(2), pages 646-655, June.
    8. Geoffrey Jones & Wesley O. Johnson & Timothy E. Hanson & Ronald Christensen, 2010. "Identifiability of Models for Multiple Diagnostic Testing in the Absence of a Gold Standard," Biometrics, The International Biometric Society, vol. 66(3), pages 855-863, September.
    9. Scott Weichenthal & Lawrence Joseph & Patrick Bélisle & André Dufresne, 2010. "Bayesian Estimation of the Probability of Asbestos Exposure from Lung Fiber Counts," Biometrics, The International Biometric Society, vol. 66(2), pages 603-612, June.
    10. Caitlin Ward & Grant D. Brown & Jacob J. Oleson, 2023. "An individual level infectious disease model in the presence of uncertainty from multiple, imperfect diagnostic tests," Biometrics, The International Biometric Society, vol. 79(1), pages 426-436, March.
    11. Beavers, Daniel P. & Stamey, James D., 2012. "Bayesian sample size determination for binary regression with a misclassified covariate and no gold standard," Computational Statistics & Data Analysis, Elsevier, vol. 56(8), pages 2574-2582.
    12. Stamey, James D. & Boese, Doyle H. & Young, Dean M., 2008. "Confidence intervals for parameters of two diagnostic tests in the absence of a gold standard," Computational Statistics & Data Analysis, Elsevier, vol. 52(3), pages 1335-1346, January.
    13. Paul Gustafson & Sander Greenland, 2006. "The Performance of Random Coefficient Regression in Accounting for Residual Confounding," Biometrics, The International Biometric Society, vol. 62(3), pages 760-768, September.
    14. Adam J. Branscum & Dunlei Cheng & J. Jack Lee, 2015. "Testing hypotheses about medical test accuracy: considerations for design and inference," Journal of Applied Statistics, Taylor & Francis Journals, vol. 42(5), pages 1106-1119, May.
    15. Gustafson Paul, 2010. "Bayesian Inference for Partially Identified Models," The International Journal of Biostatistics, De Gruyter, vol. 6(2), pages 1-20, March.
    16. Min Zhang & Chong Wang & Annette O’Connor, 2021. "A Bayesian approach to modeling antimicrobial multidrug resistance," PLOS ONE, Public Library of Science, vol. 16(12), pages 1-14, December.
    17. Elizabeth R. Brown, 2010. "Bayesian Estimation of the Time-Varying Sensitivity of a Diagnostic Test with Application to Mother-to-Child Transmission of HIV," Biometrics, The International Biometric Society, vol. 66(4), pages 1266-1274, December.
    18. Nandini Dendukuri & Elham Rahme & Patrick Bélisle & Lawrence Joseph, 2004. "Bayesian Sample Size Determination for Prevalence and Diagnostic Test Studies in the Absence of a Gold Standard Test," Biometrics, The International Biometric Society, vol. 60(2), pages 388-397, June.
    19. Paul S. Albert & Lori E. Dodd, 2004. "A Cautionary Note on the Robustness of Latent Class Models for Estimating Diagnostic Error without a Gold Standard," Biometrics, The International Biometric Society, vol. 60(2), pages 427-435, June.
    20. Martin Ladouceur & Elham Rahme & Christian A. Pineau & Lawrence Joseph, 2007. "Robustness of Prevalence Estimates Derived from Misclassified Data from Administrative Databases," Biometrics, The International Biometric Society, vol. 63(1), pages 272-279, March.

    Corrections

    All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:gam:jijerp:v:16:y:2019:i:16:p:2912-:d:257549. See general information about how to correct material in RePEc.

    If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.

    If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .

    If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.

    For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: MDPI Indexing Manager (email available below). General contact details of provider: https://www.mdpi.com .

    Please note that corrections may take a couple of weeks to filter through the various RePEc services.

    IDEAS is a RePEc service. RePEc uses bibliographic data supplied by the respective publishers.