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Oxygen channels and fractal wave–particle duality in the evolution of myoglobin and neuroglobin

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  • Sachdeva, Vedant
  • Phillips, James C.

Abstract

The evolution of terrestrial and aquatic globins is dominated by changes in two proximate–distal His channels, here monitored quantitatively by hydropathic waves. These waves reveal allometric functional features inaccessible to single amino acid stereochemical contact models, and even very large all-atom Newtonian simulations. The evolutionary differences between these features between myoglobin and neuroglobin are related to the two oxidation channels through hydropathic wave analysis, which identifies subtle interspecies functional differences inaccessible to traditional size and metabolic scaling studies. Level set analysis involves dynamic synchronization of allometric interactions across entire globins. Amino acid sequences alone show functional differences between species, which reflect basic metabolic differences (for instance, between temperate and tropical fresh water fish, or differing escape strategies of mice and rabbits).

Suggested Citation

  • Sachdeva, Vedant & Phillips, James C., 2016. "Oxygen channels and fractal wave–particle duality in the evolution of myoglobin and neuroglobin," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 463(C), pages 1-11.
    • Handle: RePEc:eee:phsmap:v:463:y:2016:i:c:p:1-11
    DOI: 10.1016/j.physa.2016.07.007
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    References listed on IDEAS

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    1. Phillips, J.C., 2014. "Fractals and self-organized criticality in anti-inflammatory drugs," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 415(C), pages 538-543.
    2. Geoffrey B. West & James H. Brown & Brian J. Enquist, 1999. "The Fourth Dimension of Life: Fractal Geometry and Allometric Scaling of Organisms," Working Papers 99-07-047, Santa Fe Institute.
    3. Phillips, J.C., 2015. "Similarity is not enough: Tipping points of Ebola Zaire mortalities," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 427(C), pages 277-281.
    4. Phillips, J.C., 2014. "Fractals and self-organized criticality in proteins," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 415(C), pages 440-448.
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    Cited by:

    1. Allan, Douglas C. & Phillips, J.C., 2017. "Evolution of the ubiquitin-activating enzyme Uba1 (E1)," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 483(C), pages 456-461.
    2. Xu, Xiu-Lian & Shi, Jin-Xuan & Wang, Jun & Li, Wenfei, 2021. "Long-range correlation and critical fluctuations in coevolution networks of protein sequences," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 562(C).
    3. Phillips, J.C., 2017. "Giant hub Src and Syk tyrosine kinase thermodynamic profiles recapitulate evolution," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 483(C), pages 330-336.

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