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Graph-based sparse linear discriminant analysis for high-dimensional classification

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  • Liu, Jianyu
  • Yu, Guan
  • Liu, Yufeng

Abstract

Linear discriminant analysis (LDA) is a well-known classification technique that enjoyed great success in practical applications. Despite its effectiveness for traditional low-dimensional problems, extensions of LDA are necessary in order to classify high-dimensional data. Many variants of LDA have been proposed in the literature. However, most of these methods do not fully incorporate the structure information among predictors when such information is available. In this paper, we introduce a new high-dimensional LDA technique, namely graph-based sparse LDA (GSLDA), that utilizes the graph structure among the features. In particular, we use the regularized regression formulation for penalized LDA techniques, and propose to impose a structure-based sparse penalty on the discriminant vector β. The graph structure can be either given or estimated from the training data. Moreover, we explore the relationship between the within-class feature structure and the overall feature structure. Based on this relationship, we further propose a variant of our proposed GSLDA to utilize effectively unlabeled data, which can be abundant in the semi-supervised learning setting. With the new regularization, we can obtain a sparse estimate of β and more accurate and interpretable classifiers than many existing methods. Both the selection consistency of β estimation and the convergence rate of the classifier are established, and the resulting classifier has an asymptotic Bayes error rate. Finally, we demonstrate the competitive performance of the proposed GSLDA on both simulated and real data studies.

Suggested Citation

  • Liu, Jianyu & Yu, Guan & Liu, Yufeng, 2019. "Graph-based sparse linear discriminant analysis for high-dimensional classification," Journal of Multivariate Analysis, Elsevier, vol. 171(C), pages 250-269.
  • Handle: RePEc:eee:jmvana:v:171:y:2019:i:c:p:250-269
    DOI: 10.1016/j.jmva.2018.12.007
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    References listed on IDEAS

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    1. Jiahua Chen & Zehua Chen, 2008. "Extended Bayesian information criteria for model selection with large model spaces," Biometrika, Biometrika Trust, vol. 95(3), pages 759-771.
    2. Lukas Meier & Sara Van De Geer & Peter Bühlmann, 2008. "The group lasso for logistic regression," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 70(1), pages 53-71, February.
    3. Guan Yu & Yufeng Liu, 2016. "Sparse Regression Incorporating Graphical Structure Among Predictors," Journal of the American Statistical Association, Taylor & Francis Journals, vol. 111(514), pages 707-720, April.
    4. Jianqing Fan & Yang Feng & Xin Tong, 2012. "A road to classification in high dimensional space: the regularized optimal affine discriminant," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 74(4), pages 745-771, September.
    5. Ming Yuan & Yi Lin, 2007. "Model selection and estimation in the Gaussian graphical model," Biometrika, Biometrika Trust, vol. 94(1), pages 19-35.
    6. Luo, Shan & Chen, Zehua, 2014. "Edge detection in sparse Gaussian graphical models," Computational Statistics & Data Analysis, Elsevier, vol. 70(C), pages 138-152.
    7. Yunzhang Zhu & Xiaotong Shen & Wei Pan, 2013. "Simultaneous Grouping Pursuit and Feature Selection Over an Undirected Graph," Journal of the American Statistical Association, Taylor & Francis Journals, vol. 108(502), pages 713-725, June.
    8. Sunkyung Kim & Wei Pan & Xiaotong Shen, 2013. "Network-Based Penalized Regression With Application to Genomic Data," Biometrics, The International Biometric Society, vol. 69(3), pages 582-593, September.
    9. Wei Pan & Benhuai Xie & Xiaotong Shen, 2010. "Incorporating Predictor Network in Penalized Regression with Application to Microarray Data," Biometrics, The International Biometric Society, vol. 66(2), pages 474-484, June.
    10. Sen Zhao & Ali Shojaie, 2016. "A significance test for graph-constrained estimation," Biometrics, The International Biometric Society, vol. 72(2), pages 484-493, June.
    11. Howard D. Bondell & Brian J. Reich, 2008. "Simultaneous Regression Shrinkage, Variable Selection, and Supervised Clustering of Predictors with OSCAR," Biometrics, The International Biometric Society, vol. 64(1), pages 115-123, March.
    12. Qing Mai & Hui Zou & Ming Yuan, 2012. "A direct approach to sparse discriminant analysis in ultra-high dimensions," Biometrika, Biometrika Trust, vol. 99(1), pages 29-42.
    13. Shan Luo & Zehua Chen, 2014. "Sequential Lasso Cum EBIC for Feature Selection With Ultra-High Dimensional Feature Space," Journal of the American Statistical Association, Taylor & Francis Journals, vol. 109(507), pages 1229-1240, September.
    14. Ming Yuan & Yi Lin, 2006. "Model selection and estimation in regression with grouped variables," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 68(1), pages 49-67, February.
    15. Cai, Tony & Liu, Weidong & Luo, Xi, 2011. "A Constrained â„“1 Minimization Approach to Sparse Precision Matrix Estimation," Journal of the American Statistical Association, American Statistical Association, vol. 106(494), pages 594-607.
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    Cited by:

    1. Gao, Zhenguo & Wang, Xinye & Kang, Xiaoning, 2023. "Ensemble LDA via the modified Cholesky decomposition," Computational Statistics & Data Analysis, Elsevier, vol. 188(C).

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