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Completely monotone distributions: Mixing, approximation and estimation of number of species

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  • Balabdaoui, Fadoua
  • Kulagina, Yulia

Abstract

The problem of species richness estimation using complete monotonicity of the distribution of species abundances is considered. Complete monotonicity is the most natural surrogate for k-monotonicity when k is large. The latter model has been considered in the same estimation problem adopting two different approaches which both necessitate selecting the unknown degree of monotonicity k via some chosen criterion. It is shown that such selection procedures can be avoided by appropriately approximating the true completely monotone distribution by a kn-monotone one such that kn grows logarithmically as a function of the sample size n. Furthermore, the proposed estimator of the true total number of species is proved to be asymptotically normal. An extended simulation study indicates that it is quite competitive when compared to other available estimators, and this remains true even when complete monotonicity is not satisfied. It is further illustrated how the method can be applied in practice by using four real datasets.

Suggested Citation

  • Balabdaoui, Fadoua & Kulagina, Yulia, 2020. "Completely monotone distributions: Mixing, approximation and estimation of number of species," Computational Statistics & Data Analysis, Elsevier, vol. 150(C).
  • Handle: RePEc:eee:csdana:v:150:y:2020:i:c:s0167947320301055
    DOI: 10.1016/j.csda.2020.107014
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    1. Dankmar Böhning & Ronny Kuhnert, 2006. "Equivalence of Truncated Count Mixture Distributions and Mixtures of Truncated Count Distributions," Biometrics, The International Biometric Society, vol. 62(4), pages 1207-1215, December.
    2. Anne Chao & John Bunge, 2002. "Estimating the Number of Species in a Stochastic Abundance Model," Biometrics, The International Biometric Society, vol. 58(3), pages 531-539, September.
    3. Madeleine Cule & Richard Samworth & Michael Stewart, 2010. "Maximum likelihood estimation of a multi‐dimensional log‐concave density," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 72(5), pages 545-607, November.
    4. Piet Groeneboom & Geurt Jongbloed & Jon A. Wellner, 2008. "The Support Reduction Algorithm for Computing Non‐Parametric Function Estimates in Mixture Models," Scandinavian Journal of Statistics, Danish Society for Theoretical Statistics;Finnish Statistical Society;Norwegian Statistical Association;Swedish Statistical Association, vol. 35(3), pages 385-399, September.
    5. Zhiyi Zhang & Michael Grabchak, 2016. "Entropic representation and estimation of diversity indices," Journal of Nonparametric Statistics, Taylor & Francis Journals, vol. 28(3), pages 563-575, September.
    6. repec:dau:papers:123456789/11474 is not listed on IDEAS
    7. Balabdaoui, Fadoua & Durot, Cécile & Koladjo, Babagnidé François, 2018. "Testing convexity of a discrete distribution," Statistics & Probability Letters, Elsevier, vol. 137(C), pages 8-13.
    8. Cécile Durot & Sylvie Huet & François Koladjo & Stéphane Robin, 2015. "Nonparametric species richness estimation under convexity constraint," Environmetrics, John Wiley & Sons, Ltd., vol. 26(7), pages 502-513, November.
    9. Claude Lefèvre & Stéphane Loisel, 2013. "On multiply monotone distributions, continuous or discrete, with applications," Post-Print hal-00750562, HAL.
    10. Fadoua Balabdaoui & Jon A. Wellner, 2010. "Estimation of a k‐monotone density: characterizations, consistency and minimax lower bounds," Statistica Neerlandica, Netherlands Society for Statistics and Operations Research, vol. 64(1), pages 45-70, February.
    11. Giguelay, J. & Huet, S., 2018. "Testing k-monotonicity of a discrete distribution. Application to the estimation of the number of classes in a population," Computational Statistics & Data Analysis, Elsevier, vol. 127(C), pages 96-115.
    12. Chee, Chew-Seng & Wang, Yong, 2016. "Nonparametric estimation of species richness using discrete k-monotone distributions," Computational Statistics & Data Analysis, Elsevier, vol. 93(C), pages 107-118.
    13. Yong Wang, 2007. "On fast computation of the non‐parametric maximum likelihood estimate of a mixing distribution," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 69(2), pages 185-198, April.
    14. Fadoua Balabdaoui & Hanna Jankowski & Kaspar Rufibach & Marios Pavlides, 2013. "Asymptotics of the discrete log-concave maximum likelihood estimator and related applications," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 75(4), pages 769-790, September.
    15. Durot, Cécile & Huet, Sylvie & Koladjo, François & Robin, Stéphane, 2013. "Least-squares estimation of a convex discrete distribution," Computational Statistics & Data Analysis, Elsevier, vol. 67(C), pages 282-298.
    16. Zhiyi Zhang & Chen Chen & Jialin Zhang, 2020. "Estimation of population size in entropic perspective," Communications in Statistics - Theory and Methods, Taylor & Francis Journals, vol. 49(2), pages 307-324, January.
    17. repec:dau:papers:123456789/4650 is not listed on IDEAS
    18. Wang, Ji-Ping Z. & Lindsay, Bruce G., 2005. "A Penalized Nonparametric Maximum Likelihood Approach to Species Richness Estimation," Journal of the American Statistical Association, American Statistical Association, vol. 100, pages 942-959, September.
    19. Vaart,A. W. van der, 1998. "Asymptotic Statistics," Cambridge Books, Cambridge University Press, number 9780521496032.
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