IDEAS home Printed from https://ideas.repec.org/a/eee/csdana/v103y2016icp401-412.html
   My bibliography  Save this article

The use of random-effect models for high-dimensional variable selection problems

Author

Listed:
  • Kwon, Sunghoon
  • Oh, Seungyoung
  • Lee, Youngjo

Abstract

We study the use of random-effect models for variable selection in high-dimensional generalized linear models where the number of covariates exceeds the sample size. Certain distributional assumptions on the random effects produce a penalty that is non-convex and unbounded at the origin. We introduce a unified algorithm that can be applied to various statistical models including generalized linear models. Simulation studies and data analysis are provided.

Suggested Citation

  • Kwon, Sunghoon & Oh, Seungyoung & Lee, Youngjo, 2016. "The use of random-effect models for high-dimensional variable selection problems," Computational Statistics & Data Analysis, Elsevier, vol. 103(C), pages 401-412.
    • Handle: RePEc:eee:csdana:v:103:y:2016:i:c:p:401-412
    DOI: 10.1016/j.csda.2016.05.016
    as

    Download full text from publisher

    File URL: http://www.sciencedirect.com/science/article/pii/S0167947316301281
    Download Restriction: Full text for ScienceDirect subscribers only.
    File URL: https://libkey.io/10.1016/j.csda.2016.05.016?utm_source=ideas
    LibKey link: if access is restricted and if your library uses this service, LibKey will redirect you to where you can use your library subscription to access this item
    ---><---

    As the access to this document is restricted, you may want to search for a different version of it.

    References listed on IDEAS

    as
    1. Zou, Hui, 2006. "The Adaptive Lasso and Its Oracle Properties," Journal of the American Statistical Association, American Statistical Association, vol. 101, pages 1418-1429, December.
    2. Yuhong Yang, 2005. "Can the strengths of AIC and BIC be shared? A conflict between model indentification and regression estimation," Biometrika, Biometrika Trust, vol. 92(4), pages 937-950, December.
    3. Lee Woojoo & Lee Donghwan & Lee Youngjo & Pawitan Yudi, 2011. "Sparse Canonical Covariance Analysis for High-throughput Data," Statistical Applications in Genetics and Molecular Biology, De Gruyter, vol. 10(1), pages 1-24, July.
    4. Youngjo Lee & John A. Nelder, 2006. "Double hierarchical generalized linear models (with discussion)," Journal of the Royal Statistical Society Series C, Royal Statistical Society, vol. 55(2), pages 139-185, April.
    5. Kim, Yongdai & Choi, Hosik & Oh, Hee-Seok, 2008. "Smoothly Clipped Absolute Deviation on High Dimensions," Journal of the American Statistical Association, American Statistical Association, vol. 103(484), pages 1665-1673.
    6. Fan J. & Li R., 2001. "Variable Selection via Nonconcave Penalized Likelihood and its Oracle Properties," Journal of the American Statistical Association, American Statistical Association, vol. 96, pages 1348-1360, December.
    7. Robert Tibshirani & Michael Saunders & Saharon Rosset & Ji Zhu & Keith Knight, 2005. "Sparsity and smoothness via the fused lasso," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 67(1), pages 91-108, February.
    8. Yingying Fan & Cheng Yong Tang, 2013. "Tuning parameter selection in high dimensional penalized likelihood," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 75(3), pages 531-552, June.
    9. Hui Zou & Trevor Hastie, 2005. "Addendum: Regularization and variable selection via the elastic net," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 67(5), pages 768-768, November.
    10. Hui Zou & Trevor Hastie, 2005. "Regularization and variable selection via the elastic net," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 67(2), pages 301-320, April.
    11. Xiaotong Shen & Wei Pan & Yunzhang Zhu, 2012. "Likelihood-Based Selection and Sharp Parameter Estimation," Journal of the American Statistical Association, Taylor & Francis Journals, vol. 107(497), pages 223-232, March.
    12. Ming Yuan & Yi Lin, 2006. "Model selection and estimation in regression with grouped variables," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 68(1), pages 49-67, February.
    Full references (including those not matched with items on IDEAS)

    Citations

    Citations are extracted by the CitEc Project, subscribe to its RSS feed for this item.
    as


    Cited by:

    1. Olivier Collignon & Jeongseop Han & Hyungmi An & Seungyoung Oh & Youngjo Lee, 2018. "Comparison of the modified unbounded penalty and the LASSO to select predictive genes of response to chemotherapy in breast cancer," PLOS ONE, Public Library of Science, vol. 13(10), pages 1-15, October.
    2. Lee, Sangin & Lee, Youngjo & Pawitan, Yudi, 2018. "Sparse pathway-based prediction models for high-throughput molecular data," Computational Statistics & Data Analysis, Elsevier, vol. 126(C), pages 125-135.
    3. Alexander Kirpich & Elizabeth A Ainsworth & Jessica M Wedow & Jeremy R B Newman & George Michailidis & Lauren M McIntyre, 2018. "Variable selection in omics data: A practical evaluation of small sample sizes," PLOS ONE, Public Library of Science, vol. 13(6), pages 1-19, June.

    Most related items

    These are the items that most often cite the same works as this one and are cited by the same works as this one.
    1. Yize Zhao & Matthias Chung & Brent A. Johnson & Carlos S. Moreno & Qi Long, 2016. "Hierarchical Feature Selection Incorporating Known and Novel Biological Information: Identifying Genomic Features Related to Prostate Cancer Recurrence," Journal of the American Statistical Association, Taylor & Francis Journals, vol. 111(516), pages 1427-1439, October.
    2. Loann David Denis Desboulets, 2018. "A Review on Variable Selection in Regression Analysis," Econometrics, MDPI, vol. 6(4), pages 1-27, November.
    3. Howard D. Bondell & Brian J. Reich, 2009. "Simultaneous Factor Selection and Collapsing Levels in ANOVA," Biometrics, The International Biometric Society, vol. 65(1), pages 169-177, March.
    4. Shanshan Qin & Hao Ding & Yuehua Wu & Feng Liu, 2021. "High-dimensional sign-constrained feature selection and grouping," Annals of the Institute of Statistical Mathematics, Springer;The Institute of Statistical Mathematics, vol. 73(4), pages 787-819, August.
    5. Tutz, Gerhard & Pößnecker, Wolfgang & Uhlmann, Lorenz, 2015. "Variable selection in general multinomial logit models," Computational Statistics & Data Analysis, Elsevier, vol. 82(C), pages 207-222.
    6. Takumi Saegusa & Tianzhou Ma & Gang Li & Ying Qing Chen & Mei-Ling Ting Lee, 2020. "Variable Selection in Threshold Regression Model with Applications to HIV Drug Adherence Data," Statistics in Biosciences, Springer;International Chinese Statistical Association, vol. 12(3), pages 376-398, December.
    7. Ricardo P. Masini & Marcelo C. Medeiros & Eduardo F. Mendes, 2023. "Machine learning advances for time series forecasting," Journal of Economic Surveys, Wiley Blackwell, vol. 37(1), pages 76-111, February.
    8. Massimiliano Caporin & Francesco Poli, 2017. "Building News Measures from Textual Data and an Application to Volatility Forecasting," Econometrics, MDPI, vol. 5(3), pages 1-46, August.
    9. Pei Wang & Shunjie Chen & Sijia Yang, 2022. "Recent Advances on Penalized Regression Models for Biological Data," Mathematics, MDPI, vol. 10(19), pages 1-24, October.
    10. Justin B. Post & Howard D. Bondell, 2013. "Factor Selection and Structural Identification in the Interaction ANOVA Model," Biometrics, The International Biometric Society, vol. 69(1), pages 70-79, March.
    11. Jeon, Jong-June & Kwon, Sunghoon & Choi, Hosik, 2017. "Homogeneity detection for the high-dimensional generalized linear model," Computational Statistics & Data Analysis, Elsevier, vol. 114(C), pages 61-74.
    12. Jiang, Liewen & Bondell, Howard D. & Wang, Huixia Judy, 2014. "Interquantile shrinkage and variable selection in quantile regression," Computational Statistics & Data Analysis, Elsevier, vol. 69(C), pages 208-219.
    13. Ismail Shah & Hina Naz & Sajid Ali & Amani Almohaimeed & Showkat Ahmad Lone, 2023. "A New Quantile-Based Approach for LASSO Estimation," Mathematics, MDPI, vol. 11(6), pages 1-13, March.
    14. Sunkyung Kim & Wei Pan & Xiaotong Shen, 2013. "Network-Based Penalized Regression With Application to Genomic Data," Biometrics, The International Biometric Society, vol. 69(3), pages 582-593, September.
    15. Diego Vidaurre & Concha Bielza & Pedro Larrañaga, 2013. "A Survey of L1 Regression," International Statistical Review, International Statistical Institute, vol. 81(3), pages 361-387, December.
    16. Mike K. P. So & Wing Ki Liu & Amanda M. Y. Chu, 2018. "Bayesian Shrinkage Estimation Of Time-Varying Covariance Matrices In Financial Time Series," Advances in Decision Sciences, Asia University, Taiwan, vol. 22(1), pages 369-404, December.
    17. Gerda Claeskens, 2012. "Focused estimation and model averaging with penalization methods: an overview," Statistica Neerlandica, Netherlands Society for Statistics and Operations Research, vol. 66(3), pages 272-287, August.
    18. Yen-Shiu Chin & Ting-Li Chen, 2016. "Minimizing variable selection criteria by Markov chain Monte Carlo," Computational Statistics, Springer, vol. 31(4), pages 1263-1286, December.
    19. Zhigeng Geng & Sijian Wang & Menggang Yu & Patrick O. Monahan & Victoria Champion & Grace Wahba, 2015. "Group variable selection via convex log-exp-sum penalty with application to a breast cancer survivor study," Biometrics, The International Biometric Society, vol. 71(1), pages 53-62, March.
    20. Mingqiu Wang & Guo-Liang Tian, 2016. "Robust group non-convex estimations for high-dimensional partially linear models," Journal of Nonparametric Statistics, Taylor & Francis Journals, vol. 28(1), pages 49-67, March.

    Corrections

    All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:eee:csdana:v:103:y:2016:i:c:p:401-412. See general information about how to correct material in RePEc.

    If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.

    If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .

    If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.

    For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: Catherine Liu (email available below). General contact details of provider: http://www.elsevier.com/locate/csda .

    Please note that corrections may take a couple of weeks to filter through the various RePEc services.

    IDEAS is a RePEc service. RePEc uses bibliographic data supplied by the respective publishers.