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Multi‐subject stochastic blockmodels with mixed effects for adaptive analysis of individual differences in human brain network cluster structure

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  • Dragana M. Pavlović
  • Bryan R.L. Guillaume
  • Soroosh Afyouni
  • Thomas E. Nichols

Abstract

Recently, there has been a renewed interest in the class of stochastic blockmodels (SBM) and their applications to multi‐subject brain networks. In our most recent work, we have considered an extension of the classical SBM, termed heterogeneous SBM (Het‐SBM), that models subject variability in the cluster‐connectivity profiles through the addition of a logistic regression model with subject‐specific covariates on the level of each block. Although this model has proved to be useful in both the clustering and inference aspects of multi‐subject brain network data, including fleshing out differences in connectivity between patients and controls, it does not account for dependencies that may exist within subjects. To overcome this limitation, we propose an extension of Het‐SBM, termed Het‐Mixed‐SBM, in which we model the within‐subject dependencies by adding subject‐ and block‐level random intercepts in the embedded logistic regression model. Using synthetic data, we investigate the accuracy of the partitions estimated by our proposed model as well as the validity of inference procedures based on the Wald and permutation tests. Finally, we illustrate the model by analyzing the resting‐state fMRI networks of 99 healthy volunteers from the Human Connectome Project (HCP) using covariates like age, gender, and IQ to explain the clustering patterns observed in the data.

Suggested Citation

  • Dragana M. Pavlović & Bryan R.L. Guillaume & Soroosh Afyouni & Thomas E. Nichols, 2020. "Multi‐subject stochastic blockmodels with mixed effects for adaptive analysis of individual differences in human brain network cluster structure," Statistica Neerlandica, Netherlands Society for Statistics and Operations Research, vol. 74(3), pages 363-396, August.
  • Handle: RePEc:bla:stanee:v:74:y:2020:i:3:p:363-396
    DOI: 10.1111/stan.12219
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    References listed on IDEAS

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    1. Lawrence Hubert & Phipps Arabie, 1985. "Comparing partitions," Journal of Classification, Springer;The Classification Society, vol. 2(1), pages 193-218, December.
    2. D. S. Choi & P. J. Wolfe & E. M. Airoldi, 2012. "Stochastic blockmodels with a growing number of classes," Biometrika, Biometrika Trust, vol. 99(2), pages 273-284.
    3. Nowicki K. & Snijders T. A. B., 2001. "Estimation and Prediction for Stochastic Blockstructures," Journal of the American Statistical Association, American Statistical Association, vol. 96, pages 1077-1087, September.
    4. Max Hinne & Matthias Ekman & Ronald J Janssen & Tom Heskes & Marcel A J van Gerven, 2015. "Probabilistic Clustering of the Human Connectome Identifies Communities and Hubs," PLOS ONE, Public Library of Science, vol. 10(1), pages 1-17, January.
    5. Dragana M Pavlovic & Petra E Vértes & Edward T Bullmore & William R Schafer & Thomas E Nichols, 2014. "Stochastic Blockmodeling of the Modules and Core of the Caenorhabditis elegans Connectome," PLOS ONE, Public Library of Science, vol. 9(7), pages 1-16, July.
    6. Christophe Ambroise & Catherine Matias, 2012. "New consistent and asymptotically normal parameter estimates for random‐graph mixture models," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 74(1), pages 3-35, January.
    7. Paul T E Cusack, 2020. "The Human Brain," Biomedical Journal of Scientific & Technical Research, Biomedical Research Network+, LLC, vol. 31(3), pages 24261-24266, October.
    8. Catherine Matias & Vincent Miele, 2017. "Statistical clustering of temporal networks through a dynamic stochastic block model," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 79(4), pages 1119-1141, September.
    9. Emmanuel Lesaffre & Bart Spiessens, 2001. "On the effect of the number of quadrature points in a logistic random effects model: an example," Journal of the Royal Statistical Society Series C, Royal Statistical Society, vol. 50(3), pages 325-335.
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