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On using electronic health records to improve optimal treatment rules in randomized trials

Author

Listed:
  • Peng Wu
  • Donglin Zeng
  • Haoda Fu
  • Yuanjia Wang

Abstract

Individualized treatment rules (ITRs) tailor medical treatments according to patient‐specific characteristics in order to optimize patient outcomes. Data from randomized controlled trials (RCTs) are used to infer valid ITRs using statistical and machine learning methods. However, RCTs are usually conducted under specific inclusion/exclusion criteria, thus limiting their generalizability to a broader patient population in real‐world practice settings. Because electronic health records (EHRs) document treatment prescriptions in the real world, transferring information in EHRs to RCTs, if done appropriately, could potentially improve the performance of ITRs, in terms of precision and generalizability. In this work, we propose a new domain adaptation method to learn ITRs by incorporating information from EHRs. Unless we assume that there is no unmeasured confounding in EHRs, we cannot directly learn the optimal ITR from the combined EHR and RCT data. Instead, we first pretrain “super” features from EHRs that summarize physician treatment decisions and patient observed benefits in the real world, as these are likely to be informative of the optimal ITRs. We then augment the feature space of the RCT and learn the optimal ITRs by stratifying by super features using subjects enrolled in RCT. We adopt Q‐learning and a modified matched‐learning algorithm for estimation. We present heuristic justification of our method and conduct simulation studies to demonstrate the performance of super features. Finally, we apply our method to transfer information learned from EHRs of patients with type 2 diabetes to learn individualized insulin therapies from RCT data.

Suggested Citation

  • Peng Wu & Donglin Zeng & Haoda Fu & Yuanjia Wang, 2020. "On using electronic health records to improve optimal treatment rules in randomized trials," Biometrics, The International Biometric Society, vol. 76(4), pages 1075-1086, December.
  • Handle: RePEc:bla:biomet:v:76:y:2020:i:4:p:1075-1086
    DOI: 10.1111/biom.13288
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    References listed on IDEAS

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    1. Yingqi Zhao & Donglin Zeng & A. John Rush & Michael R. Kosorok, 2012. "Estimating Individualized Treatment Rules Using Outcome Weighted Learning," Journal of the American Statistical Association, Taylor & Francis Journals, vol. 107(499), pages 1106-1118, September.
    2. Erica E. M. Moodie & Thomas S. Richardson & David A. Stephens, 2007. "Demystifying Optimal Dynamic Treatment Regimes," Biometrics, The International Biometric Society, vol. 63(2), pages 447-455, June.
    3. S. A. Murphy, 2003. "Optimal dynamic treatment regimes," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 65(2), pages 331-355, May.
    4. Peng Wu & Donglin Zeng & Yuanjia Wang, 2020. "Matched Learning for Optimizing Individualized Treatment Strategies Using Electronic Health Records," Journal of the American Statistical Association, Taylor & Francis Journals, vol. 115(529), pages 380-392, January.
    5. Lu Tian & Ash A. Alizadeh & Andrew J. Gentles & Robert Tibshirani, 2014. "A Simple Method for Estimating Interactions Between a Treatment and a Large Number of Covariates," Journal of the American Statistical Association, Taylor & Francis Journals, vol. 109(508), pages 1517-1532, December.
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