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Personal genomes: The case of the missing heritability

Citations

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Cited by:

  1. Zhengcao Li & Henner Simianer, 2020. "Pan-genomic open reading frames: A potential supplement of single nucleotide polymorphisms in estimation of heritability and genomic prediction," PLOS Genetics, Public Library of Science, vol. 16(8), pages 1-19, August.
  2. Yumei Yang & Qishan Wang & Qiang Chen & Rongrong Liao & Xiangzhe Zhang & Hongjie Yang & Youmin Zheng & Zhiwu Zhang & Yuchun Pan, 2014. "A New Genotype Imputation Method with Tolerance to High Missing Rate and Rare Variants," PLOS ONE, Public Library of Science, vol. 9(6), pages 1-7, June.
  3. Chung-Feng Kao & Jia-Rou Liu & Hung Hung & Po-Hsiu Kuo, 2015. "A Robust GWSS Method to Simultaneously Detect Rare and Common Variants for Complex Disease," PLOS ONE, Public Library of Science, vol. 10(4), pages 1-14, April.
  4. Chuong B Do & David A Hinds & Uta Francke & Nicholas Eriksson, 2012. "Comparison of Family History and SNPs for Predicting Risk of Complex Disease," PLOS Genetics, Public Library of Science, vol. 8(10), pages 1-16, October.
  5. Janet Currie, 2011. "Inequality at Birth: Some Causes and Consequences," American Economic Review, American Economic Association, vol. 101(3), pages 1-22, May.
  6. Yunpeng Wang & Arne B Gjuvsland & Jon Olav Vik & Nicolas P Smith & Peter J Hunter & Stig W Omholt, 2012. "Parameters in Dynamic Models of Complex Traits are Containers of Missing Heritability," PLOS Computational Biology, Public Library of Science, vol. 8(4), pages 1-9, April.
  7. Young Lee & Suyeon Park & Sanghoon Moon & Juyoung Lee & Robert C. Elston & Woojoo Lee & Sungho Won, 2014. "On the Analysis of a Repeated Measure Design in Genome-Wide Association Analysis," IJERPH, MDPI, vol. 11(12), pages 1-21, November.
  8. Janet Currie, 2011. "Ungleichheiten bei der Geburt: Einige Ursachen und Folgen," Perspektiven der Wirtschaftspolitik, Verein für Socialpolitik, vol. 12(s1), pages 42-65, May.
  9. Karen Kapur & Toby Johnson & Noam D Beckmann & Joban Sehmi & Toshiko Tanaka & Zoltán Kutalik & Unnur Styrkarsdottir & Weihua Zhang & Diana Marek & Daniel F Gudbjartsson & Yuri Milaneschi & Hilma Holm , 2010. "Genome-Wide Meta-Analysis for Serum Calcium Identifies Significantly Associated SNPs near the Calcium-Sensing Receptor (CASR) Gene," PLOS Genetics, Public Library of Science, vol. 6(7), pages 1-12, July.
  10. Shashaank Vattikuti & Juen Guo & Carson C Chow, 2012. "Heritability and Genetic Correlations Explained by Common SNPs for Metabolic Syndrome Traits," PLOS Genetics, Public Library of Science, vol. 8(3), pages 1-8, March.
  11. Xinge Jessie Jeng & Zhongyin John Daye & Wenbin Lu & Jung-Ying Tzeng, 2016. "Rare Variants Association Analysis in Large-Scale Sequencing Studies at the Single Locus Level," PLOS Computational Biology, Public Library of Science, vol. 12(6), pages 1-23, June.
  12. Lucas Alvizi & Diogo Nani & Luciano Abreu Brito & Gerson Shigeru Kobayashi & Maria Rita Passos-Bueno & Roberto Mayor, 2023. "Neural crest E-cadherin loss drives cleft lip/palate by epigenetic modulation via pro-inflammatory gene–environment interaction," Nature Communications, Nature, vol. 14(1), pages 1-14, December.
  13. Kaiqiong Zhao & Karim Oualkacha & Lajmi Lakhal‐Chaieb & Aurélie Labbe & Kathleen Klein & Antonio Ciampi & Marie Hudson & Inés Colmegna & Tomi Pastinen & Tieyuan Zhang & Denise Daley & Celia M.T. Green, 2021. "A novel statistical method for modeling covariate effects in bisulfite sequencing derived measures of DNA methylation," Biometrics, The International Biometric Society, vol. 77(2), pages 424-438, June.
  14. Elodie Persyn & Matilde Karakachoff & Solena Le Scouarnec & Camille Le Clézio & Dominique Campion & French Exome Consortium & Jean-Jacques Schott & Richard Redon & Lise Bellanger & Christian Dina, 2017. "DoEstRare: A statistical test to identify local enrichments in rare genomic variants associated with disease," PLOS ONE, Public Library of Science, vol. 12(7), pages 1-20, July.
  15. Zhiqiu Hu & Rong-Cai Yang, 2014. "Marker-Based Estimation of Genetic Parameters in Genomics," PLOS ONE, Public Library of Science, vol. 9(7), pages 1-12, July.
  16. Christian Magnus Page & Sergio E Baranzini & Bjørn-Helge Mevik & Steffan Daniel Bos & Hanne F Harbo & Bettina Kulle Andreassen, 2015. "Assessing the Power of Exome Chips," PLOS ONE, Public Library of Science, vol. 10(10), pages 1-13, October.
  17. Kettlewell, Nathan & Tymula, Agnieszka & Yoo, Hong Il, 2023. "The Heritability of Economic Preferences," IZA Discussion Papers 16633, Institute of Labor Economics (IZA).
  18. Pan, Qing & Zhao, Yunpeng, 2016. "Integrative weighted group lasso and generalized local quadratic approximation," Computational Statistics & Data Analysis, Elsevier, vol. 104(C), pages 66-78.
  19. Ren Zhou & Mengying Wang & Wenyong Li & Siyue Wang & Hongchen Zheng & Zhibo Zhou & Yonghua Hu & Jing Li & Tao Wu & Hongping Zhu & Terri H. Beaty, 2019. "Haplotype and Haplotype-Environment Interaction Analysis Revealed Roles of SPRY2 for NSCL/P among Chinese Populations," IJERPH, MDPI, vol. 16(4), pages 1-7, February.
  20. Kuang-Fu Cheng & Jin-Hua Chen, 2013. "Detecting Rare Variants in Case-Parents Association Studies," PLOS ONE, Public Library of Science, vol. 8(9), pages 1-9, September.
  21. Iuliana Ionita-Laza & Joseph D Buxbaum & Nan M Laird & Christoph Lange, 2011. "A New Testing Strategy to Identify Rare Variants with Either Risk or Protective Effect on Disease," PLOS Genetics, Public Library of Science, vol. 7(2), pages 1-6, February.
  22. Qiuyi Zhang & Yang Zhao & Ruyang Zhang & Yongyue Wei & Honggang Yi & Fang Shao & Feng Chen, 2016. "A Comparative Study of Five Association Tests Based on CpG Set for Epigenome-Wide Association Studies," PLOS ONE, Public Library of Science, vol. 11(6), pages 1-13, June.
  23. Frank Technow & Carlos D Messina & L Radu Totir & Mark Cooper, 2015. "Integrating Crop Growth Models with Whole Genome Prediction through Approximate Bayesian Computation," PLOS ONE, Public Library of Science, vol. 10(6), pages 1-20, June.
  24. Yuanjia Wang & Yin-Hsiu Chen & Qiong Yang, 2012. "Joint Rare Variant Association Test of the Average and Individual Effects for Sequencing Studies," PLOS ONE, Public Library of Science, vol. 7(3), pages 1-13, March.
  25. Dominic Russ & John A Williams & Victor Roth Cardoso & Laura Bravo-Merodio & Samantha C Pendleton & Furqan Aziz & Animesh Acharjee & Georgios V Gkoutos, 2022. "Evaluating the detection ability of a range of epistasis detection methods on simulated data for pure and impure epistatic models," PLOS ONE, Public Library of Science, vol. 17(2), pages 1-19, February.
  26. von Stumm, Sophie & Kandaswamy, Radhika & Maxwell, Jessye, 2023. "Gene-environment interplay in early life cognitive development," Intelligence, Elsevier, vol. 98(C).
  27. Gang Fang & Majda Haznadar & Wen Wang & Haoyu Yu & Michael Steinbach & Timothy R Church & William S Oetting & Brian Van Ness & Vipin Kumar, 2012. "High-Order SNP Combinations Associated with Complex Diseases: Efficient Discovery, Statistical Power and Functional Interactions," PLOS ONE, Public Library of Science, vol. 7(4), pages 1-15, April.
  28. McEvoy, Brian P. & Visscher, Peter M., 2009. "Genetics of human height," Economics & Human Biology, Elsevier, vol. 7(3), pages 294-306, December.
  29. Marcel Elie Nutsua & Annegret Fischer & Almut Nebel & Sylvia Hofmann & Stefan Schreiber & Michael Krawczak & Michael Nothnagel, 2015. "Family-Based Benchmarking of Copy Number Variation Detection Software," PLOS ONE, Public Library of Science, vol. 10(7), pages 1-17, July.
  30. Aida Bianco & Eusebio Chiefari & Carmelo G A Nobile & Daniela Foti & Maria Pavia & Antonio Brunetti, 2015. "The Association between HMGA1 rs146052672 Variant and Type 2 Diabetes: A Transethnic Meta-Analysis," PLOS ONE, Public Library of Science, vol. 10(8), pages 1-15, August.
  31. Emily Mathieu, 2016. "AGGrEGATOr: A Gene-based GEne-Gene interActTiOn test for case-control association studies," Statistical Applications in Genetics and Molecular Biology, De Gruyter, vol. 15(2), pages 151-171, April.
  32. Dongjun Chung & Hang J Kim & Hongyu Zhao, 2017. "graph-GPA: A graphical model for prioritizing GWAS results and investigating pleiotropic architecture," PLOS Computational Biology, Public Library of Science, vol. 13(2), pages 1-20, February.
  33. Charles-Elie Rabier & Philippe Barre & Torben Asp & Gilles Charmet & Brigitte Mangin, 2016. "On the Accuracy of Genomic Selection," PLOS ONE, Public Library of Science, vol. 11(6), pages 1-23, June.
  34. Gabriel E Hoffman & Benjamin A Logsdon & Jason G Mezey, 2013. "PUMA: A Unified Framework for Penalized Multiple Regression Analysis of GWAS Data," PLOS Computational Biology, Public Library of Science, vol. 9(6), pages 1-19, June.
  35. Diana Chang & Feng Gao & Andrea Slavney & Li Ma & Yedael Y Waldman & Aaron J Sams & Paul Billing-Ross & Aviv Madar & Richard Spritz & Alon Keinan, 2014. "Accounting for eXentricities: Analysis of the X Chromosome in GWAS Reveals X-Linked Genes Implicated in Autoimmune Diseases," PLOS ONE, Public Library of Science, vol. 9(12), pages 1-31, December.
  36. Hou-Feng Zheng & Jing-Jing Rong & Ming Liu & Fang Han & Xing-Wei Zhang & J Brent Richards & Li Wang, 2015. "Performance of Genotype Imputation for Low Frequency and Rare Variants from the 1000 Genomes," PLOS ONE, Public Library of Science, vol. 10(1), pages 1-10, January.
  37. Kozlitina Julia & Schucany William R., 2015. "A robust distribution-free test for genetic association studies of quantitative traits," Statistical Applications in Genetics and Molecular Biology, De Gruyter, vol. 14(5), pages 443-464, November.
  38. Scott I Vrieze & Matt McGue & Michael B Miller & Lisa N Legrand & Nicholas J Schork & William G Iacono, 2011. "An Assessment of the Individual and Collective Effects of Variants on Height Using Twins and a Developmentally Informative Study Design," PLOS Genetics, Public Library of Science, vol. 7(12), pages 1-10, December.
  39. Le Rouzic, Arnaud & Skaug, Hans J. & Hansen, Thomas F., 2010. "Estimating genetic architectures from artificial-selection responses: A random-effect framework," Theoretical Population Biology, Elsevier, vol. 77(2), pages 119-130.
  40. Patrick Murigu Kamau Njage & Clementine Henri & Pimlapas Leekitcharoenphon & Michel‐Yves Mistou & Rene S. Hendriksen & Tine Hald, 2019. "Machine Learning Methods as a Tool for Predicting Risk of Illness Applying Next‐Generation Sequencing Data," Risk Analysis, John Wiley & Sons, vol. 39(6), pages 1397-1413, June.
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