IDEAS home Printed from https://ideas.repec.org/p/zbw/jhtire/63.html
   My bibliography  Save this paper

Exploring and validating statistical reliability in forensic conservation genetics

Author

Listed:
  • Buschbom, Jutta

Abstract

Safeguarding biological diversity from evolutionary lineages to ecosystems is a major undertaking for humanity. Forensic conservation genetics for the protection of wild flora and fauna aims to provide statistical inference tools and services for the enforcement of local to global conservation and management strategies. This paper reviews statistical criteria that provide insight into and assess the reliability of conclusions drawn from statistical inference. The translation of these fundamental criteria into practice is illustrated with applications from evolutionary and forensic genetics, specifically focusing on the inference of geographic origin using population assignment approaches. [...]

Suggested Citation

  • Buschbom, Jutta, 2018. "Exploring and validating statistical reliability in forensic conservation genetics," Thünen Reports 63, Johann Heinrich von Thünen Institute, Federal Research Institute for Rural Areas, Forestry and Fisheries.
  • Handle: RePEc:zbw:jhtire:63
    DOI: 10.3220/REP1539879578000
    as

    Download full text from publisher

    File URL: https://www.econstor.eu/bitstream/10419/185055/1/1040684467.pdf
    Download Restriction: no

    File URL: https://libkey.io/10.3220/REP1539879578000?utm_source=ideas
    LibKey link: if access is restricted and if your library uses this service, LibKey will redirect you to where you can use your library subscription to access this item
    ---><---

    References listed on IDEAS

    as
    1. Zheng, Xiuwen & Weir, Bruce S., 2016. "Eigenanalysis of SNP data with an identity by descent interpretation," Theoretical Population Biology, Elsevier, vol. 107(C), pages 65-76.
    2. Nick Patterson & Alkes L Price & David Reich, 2006. "Population Structure and Eigenanalysis," PLOS Genetics, Public Library of Science, vol. 2(12), pages 1-20, December.
    3. Rajagopal, 2014. "The Human Factors," Palgrave Macmillan Books, in: Architecting Enterprise, chapter 9, pages 225-249, Palgrave Macmillan.
    4. Priya Moorjani & Nick Patterson & Joel N Hirschhorn & Alon Keinan & Li Hao & Gil Atzmon & Edward Burns & Harry Ostrer & Alkes L Price & David Reich, 2011. "The History of African Gene Flow into Southern Europeans, Levantines, and Jews," PLOS Genetics, Public Library of Science, vol. 7(4), pages 1-13, April.
    5. Gil McVean, 2009. "A Genealogical Interpretation of Principal Components Analysis," PLOS Genetics, Public Library of Science, vol. 5(10), pages 1-10, October.
    6. Wilton, Peter R. & Baduel, Pierre & Landon, Matthieu M. & Wakeley, John, 2017. "Population structure and coalescence in pedigrees: Comparisons to the structured coalescent and a framework for inference," Theoretical Population Biology, Elsevier, vol. 115(C), pages 1-12.
    7. Jeffrey W. Miller & Matthew T. Harrison, 2018. "Mixture Models With a Prior on the Number of Components," Journal of the American Statistical Association, Taylor & Francis Journals, vol. 113(521), pages 340-356, January.
    8. Daniel John Lawson & Garrett Hellenthal & Simon Myers & Daniel Falush, 2012. "Inference of Population Structure using Dense Haplotype Data," PLOS Genetics, Public Library of Science, vol. 8(1), pages 1-16, January.
    Full references (including those not matched with items on IDEAS)

    Most related items

    These are the items that most often cite the same works as this one and are cited by the same works as this one.
    1. Yedael Y Waldman & Arjun Biddanda & Natalie R Davidson & Paul Billing-Ross & Maya Dubrovsky & Christopher L Campbell & Carole Oddoux & Eitan Friedman & Gil Atzmon & Eran Halperin & Harry Ostrer & Alon, 2016. "The Genetics of Bene Israel from India Reveals Both Substantial Jewish and Indian Ancestry," PLOS ONE, Public Library of Science, vol. 11(3), pages 1-28, March.
    2. Peña-Malavera Andrea & Bruno Cecilia & Balzarini Monica & Fernandez Elmer, 2014. "Comparison of algorithms to infer genetic population structure from unlinked molecular markers," Statistical Applications in Genetics and Molecular Biology, De Gruyter, vol. 13(4), pages 1-12, August.
    3. Gyaneshwer Chaubey & Anurag Kadian & Saroj Bala & Vadlamudi Raghavendra Rao, 2015. "Genetic Affinity of the Bhil, Kol and Gond Mentioned in Epic Ramayana," PLOS ONE, Public Library of Science, vol. 10(6), pages 1-11, June.
    4. Estavoyer, Maxime & François, Olivier, 2022. "Theoretical analysis of principal components in an umbrella model of intraspecific evolution," Theoretical Population Biology, Elsevier, vol. 148(C), pages 11-21.
    5. Matthieu Bouaziz & Caroline Paccard & Mickael Guedj & Christophe Ambroise, 2012. "SHIPS: Spectral Hierarchical Clustering for the Inference of Population Structure in Genetic Studies," PLOS ONE, Public Library of Science, vol. 7(10), pages 1-17, October.
    6. Jacobo Pardo-Seco & Alberto Gómez-Carballa & Jorge Amigo & Federico Martinón-Torres & Antonio Salas, 2014. "A Genome-Wide Study of Modern-Day Tuscans: Revisiting Herodotus's Theory on the Origin of the Etruscans," PLOS ONE, Public Library of Science, vol. 9(9), pages 1-11, September.
    7. Chi-Chun Liu & David Witonsky & Anna Gosling & Ju Hyeon Lee & Harald Ringbauer & Richard Hagan & Nisha Patel & Raphaela Stahl & John Novembre & Mark Aldenderfer & Christina Warinner & Anna Di Rienzo &, 2022. "Ancient genomes from the Himalayas illuminate the genetic history of Tibetans and their Tibeto-Burman speaking neighbors," Nature Communications, Nature, vol. 13(1), pages 1-14, December.
    8. Buzbas, Erkan Ozge & Verdu, Paul, 2018. "Inference on admixture fractions in a mechanistic model of recurrent admixture," Theoretical Population Biology, Elsevier, vol. 122(C), pages 149-157.
    9. Bryc, Katarzyna & Bryc, Wlodek & Silverstein, Jack W., 2013. "Separation of the largest eigenvalues in eigenanalysis of genotype data from discrete subpopulations," Theoretical Population Biology, Elsevier, vol. 89(C), pages 34-43.
    10. Oscar Lao & Fan Liu & Andreas Wollstein & Manfred Kayser, 2014. "GAGA: A New Algorithm for Genomic Inference of Geographic Ancestry Reveals Fine Level Population Substructure in Europeans," PLOS Computational Biology, Public Library of Science, vol. 10(2), pages 1-11, February.
    11. Markus Neuditschko & Mehar S Khatkar & Herman W Raadsma, 2012. "NetView: A High-Definition Network-Visualization Approach to Detect Fine-Scale Population Structures from Genome-Wide Patterns of Variation," PLOS ONE, Public Library of Science, vol. 7(10), pages 1-13, October.
    12. Marie Louis & Petra Korlević & Milaja Nykänen & Frederick Archer & Simon Berrow & Andrew Brownlow & Eline D. Lorenzen & Joanne O’Brien & Klaas Post & Fernando Racimo & Emer Rogan & Patricia E. Rosel &, 2023. "Ancient dolphin genomes reveal rapid repeated adaptation to coastal waters," Nature Communications, Nature, vol. 14(1), pages 1-13, December.
    13. Priya Moorjani & Nick Patterson & Joel N Hirschhorn & Alon Keinan & Li Hao & Gil Atzmon & Edward Burns & Harry Ostrer & Alkes L Price & David Reich, 2011. "The History of African Gene Flow into Southern Europeans, Levantines, and Jews," PLOS Genetics, Public Library of Science, vol. 7(4), pages 1-13, April.
    14. Priya Moorjani & Nick Patterson & Po-Ru Loh & Mark Lipson & Péter Kisfali & Bela I Melegh & Michael Bonin & Ľudevít Kádaši & Olaf Rieß & Bonnie Berger & David Reich & Béla Melegh, 2013. "Reconstructing Roma History from Genome-Wide Data," PLOS ONE, Public Library of Science, vol. 8(3), pages 1-11, March.
    15. Wang Chaolong & Szpiech Zachary A & Degnan James H & Jakobsson Mattias & Pemberton Trevor J & Hardy John A & Singleton Andrew B & Rosenberg Noah A, 2010. "Comparing Spatial Maps of Human Population-Genetic Variation Using Procrustes Analysis," Statistical Applications in Genetics and Molecular Biology, De Gruyter, vol. 9(1), pages 1-22, January.
    16. Zhaoming Wang & Allan Hildesheim & Sophia S Wang & Rolando Herrero & Paula Gonzalez & Laurie Burdette & Amy Hutchinson & Gilles Thomas & Stephen J Chanock & Kai Yu, 2010. "Genetic Admixture and Population Substructure in Guanacaste Costa Rica," PLOS ONE, Public Library of Science, vol. 5(10), pages 1-10, October.
    17. Duforet-Frebourg, Nicolas & Slatkin, Montgomery, 2016. "Isolation-by-distance-and-time in a stepping-stone model," Theoretical Population Biology, Elsevier, vol. 108(C), pages 24-35.
    18. Zheng, Xiuwen & Weir, Bruce S., 2016. "Eigenanalysis of SNP data with an identity by descent interpretation," Theoretical Population Biology, Elsevier, vol. 107(C), pages 65-76.
    19. Jason Sawler & Bruce Reisch & Mallikarjuna K Aradhya & Bernard Prins & Gan-Yuan Zhong & Heidi Schwaninger & Charles Simon & Edward Buckler & Sean Myles, 2013. "Genomics Assisted Ancestry Deconvolution in Grape," PLOS ONE, Public Library of Science, vol. 8(11), pages 1-1, November.
    20. Elena Arciero & Sufyan A. Dogra & Daniel S. Malawsky & Massimo Mezzavilla & Theofanis Tsismentzoglou & Qin Qin Huang & Karen A. Hunt & Dan Mason & Saghira Malik Sharif & David A. Heel & Eamonn Sherida, 2021. "Fine-scale population structure and demographic history of British Pakistanis," Nature Communications, Nature, vol. 12(1), pages 1-16, December.

    Corrections

    All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:zbw:jhtire:63. See general information about how to correct material in RePEc.

    If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.

    If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .

    If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.

    For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: ZBW - Leibniz Information Centre for Economics (email available below). General contact details of provider: https://edirc.repec.org/data/vtigvde.html .

    Please note that corrections may take a couple of weeks to filter through the various RePEc services.

    IDEAS is a RePEc service. RePEc uses bibliographic data supplied by the respective publishers.