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Passage-Based Bibliographic Coupling: An Inter-Article Similarity Measure for Biomedical Articles

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  • Rey-Long Liu

Abstract

Biomedical literature is an essential source of biomedical evidence. To translate the evidence for biomedicine study, researchers often need to carefully read multiple articles about specific biomedical issues. These articles thus need to be highly related to each other. They should share similar core contents, including research goals, methods, and findings. However, given an article r, it is challenging for search engines to retrieve highly related articles for r. In this paper, we present a technique PBC (Passage-based Bibliographic Coupling) that estimates inter-article similarity by seamlessly integrating bibliographic coupling with the information collected from context passages around important out-link citations (references) in each article. Empirical evaluation shows that PBC can significantly improve the retrieval of those articles that biomedical experts believe to be highly related to specific articles about gene-disease associations. PBC can thus be used to improve search engines in retrieving the highly related articles for any given article r, even when r is cited by very few (or even no) articles. The contribution is essential for those researchers and text mining systems that aim at cross-validating the evidence about specific gene-disease associations.

Suggested Citation

  • Rey-Long Liu, 2015. "Passage-Based Bibliographic Coupling: An Inter-Article Similarity Measure for Biomedical Articles," PLOS ONE, Public Library of Science, vol. 10(10), pages 1-22, October.
    • Handle: RePEc:plo:pone00:0139245
    DOI: 10.1371/journal.pone.0139245
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    References listed on IDEAS

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    1. Xinhai Liu & Shi Yu & Frizo Janssens & Wolfgang Glänzel & Yves Moreau & Bart De Moor, 2010. "Weighted hybrid clustering by combining text mining and bibliometrics on a large‐scale journal database," Journal of the American Society for Information Science and Technology, Association for Information Science & Technology, vol. 61(6), pages 1105-1119, June.
    2. Xinhai Liu & Shi Yu & Frizo Janssens & Wolfgang Glänzel & Yves Moreau & Bart De Moor, 2010. "Weighted hybrid clustering by combining text mining and bibliometrics on a large-scale journal database," Journal of the Association for Information Science & Technology, Association for Information Science & Technology, vol. 61(6), pages 1105-1119, June.
    3. Shengbo Liu & Chaomei Chen & Kun Ding & Bo Wang & Kan Xu & Yuan Lin, 2014. "Literature retrieval based on citation context," Scientometrics, Springer;Akadémiai Kiadó, vol. 101(2), pages 1293-1307, November.
    4. Kevin W. Boyack & Richard Klavans, 2010. "Co‐citation analysis, bibliographic coupling, and direct citation: Which citation approach represents the research front most accurately?," Journal of the American Society for Information Science and Technology, Association for Information Science & Technology, vol. 61(12), pages 2389-2404, December.
    5. Henry Small, 2011. "Interpreting maps of science using citation context sentiments: a preliminary investigation," Scientometrics, Springer;Akadémiai Kiadó, vol. 87(2), pages 373-388, May.
    6. Henry Small, 1973. "Co‐citation in the scientific literature: A new measure of the relationship between two documents," Journal of the American Society for Information Science, Association for Information Science & Technology, vol. 24(4), pages 265-269, July.
    7. Kevin W. Boyack & Richard Klavans, 2010. "Co-citation analysis, bibliographic coupling, and direct citation: Which citation approach represents the research front most accurately?," Journal of the Association for Information Science & Technology, Association for Information Science & Technology, vol. 61(12), pages 2389-2404, December.
    8. Howard D. White & Belver C. Griffith, 1981. "Author cocitation: A literature measure of intellectual structure," Journal of the American Society for Information Science, Association for Information Science & Technology, vol. 32(3), pages 163-171, May.
    9. Frizo Janssens & Wolfgang Glänzel & Bart Moor, 2008. "A hybrid mapping of information science," Scientometrics, Springer;Akadémiai Kiadó, vol. 75(3), pages 607-631, June.
    10. Aaron Elkiss & Siwei Shen & Anthony Fader & Güneş Erkan & David States & Dragomir Radev, 2008. "Blind men and elephants: What do citation summaries tell us about a research article?," Journal of the American Society for Information Science and Technology, Association for Information Science & Technology, vol. 59(1), pages 51-62, January.
    11. Kevin W Boyack & David Newman & Russell J Duhon & Richard Klavans & Michael Patek & Joseph R Biberstine & Bob Schijvenaars & André Skupin & Nianli Ma & Katy Börner, 2011. "Clustering More than Two Million Biomedical Publications: Comparing the Accuracies of Nine Text-Based Similarity Approaches," PLOS ONE, Public Library of Science, vol. 6(3), pages 1-11, March.
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    Cited by:

    1. Rey-Long Liu, 2017. "A new bibliographic coupling measure with descriptive capability," Scientometrics, Springer;Akadémiai Kiadó, vol. 110(2), pages 915-935, February.
    2. Dejian Yu & Wanru Wang & Shuai Zhang & Wenyu Zhang & Rongyu Liu, 2017. "Hybrid self-optimized clustering model based on citation links and textual features to detect research topics," PLOS ONE, Public Library of Science, vol. 12(10), pages 1-21, October.
    3. Rons, Nadine, 2018. "Bibliometric approximation of a scientific specialty by combining key sources, title words, authors and references," Journal of Informetrics, Elsevier, vol. 12(1), pages 113-132.

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