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Pathway Analysis of Expression Data: Deciphering Functional Building Blocks of Complex Diseases

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  • Frank Emmert-Streib
  • Galina V Glazko

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  • Frank Emmert-Streib & Galina V Glazko, 2011. "Pathway Analysis of Expression Data: Deciphering Functional Building Blocks of Complex Diseases," PLOS Computational Biology, Public Library of Science, vol. 7(5), pages 1-6, May.
    • Handle: RePEc:plo:pcbi00:1002053
    DOI: 10.1371/journal.pcbi.1002053
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    References listed on IDEAS

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    1. Qiu Xing & Klebanov Lev & Yakovlev Andrei, 2005. "Correlation Between Gene Expression Levels and Limitations of the Empirical Bayes Methodology for Finding Differentially Expressed Genes," Statistical Applications in Genetics and Molecular Biology, De Gruyter, vol. 4(1), pages 1-32, November.
    2. Eric E. Schadt, 2009. "Molecular networks as sensors and drivers of common human diseases," Nature, Nature, vol. 461(7261), pages 218-223, September.
    3. van der Laan Mark J. & Dudoit Sandrine & Pollard Katherine S., 2004. "Augmentation Procedures for Control of the Generalized Family-Wise Error Rate and Tail Probabilities for the Proportion of False Positives," Statistical Applications in Genetics and Molecular Biology, De Gruyter, vol. 3(1), pages 1-27, June.
    4. Mark van der Laan & Sandrine Dudoit & Katherine Pollard, 2004. "Multiple Testing. Part III. Procedures for Control of the Generalized Family-Wise Error Rate and Proportion of False Positives," U.C. Berkeley Division of Biostatistics Working Paper Series 1140, Berkeley Electronic Press.
    5. Efron B. & Tibshirani R. & Storey J.D. & Tusher V., 2001. "Empirical Bayes Analysis of a Microarray Experiment," Journal of the American Statistical Association, American Statistical Association, vol. 96, pages 1151-1160, December.
    6. Shojaie Ali & Michailidis George, 2010. "Network Enrichment Analysis in Complex Experiments," Statistical Applications in Genetics and Molecular Biology, De Gruyter, vol. 9(1), pages 1-36, May.
    7. Mark Reimers, 2010. "Making Informed Choices about Microarray Data Analysis," PLOS Computational Biology, Public Library of Science, vol. 6(5), pages 1-7, May.
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    1. Alin Tomoiaga & Peter Westfall & Michele Donato & Sorin Draghici & Sonia Hassan & Roberto Romero & Paola Tellaroli, 2016. "Pathway crosstalk effects: shrinkage and disentanglement using a Bayesian hierarchical model," Statistics in Biosciences, Springer;International Chinese Statistical Association, vol. 8(2), pages 374-394, October.
    2. Ryu Duchwan & Xu Hongyan & George Varghese & Su Shaoyong & Wang Xiaoling & Shi Huidong & Podolsky Robert H., 2016. "Differential methylation tests of regulatory regions," Statistical Applications in Genetics and Molecular Biology, De Gruyter, vol. 15(3), pages 237-251, June.

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