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Sequencing and de novo assembly of 150 genomes from Denmark as a population reference

Author

Listed:
  • Lasse Maretty

    (Bioinformatics Centre, University of Copenhagen)

  • Jacob Malte Jensen

    (Bioinformatics Research Centre, Aarhus University
    iSEQ, Centre for Integrative Sequencing, Aarhus University)

  • Bent Petersen

    (DTU Bioinformatics, Technical University of Denmark)

  • Jonas Andreas Sibbesen

    (Bioinformatics Centre, University of Copenhagen)

  • Siyang Liu

    (Bioinformatics Centre, University of Copenhagen
    BGI-Europe)

  • Palle Villesen

    (Bioinformatics Research Centre, Aarhus University
    iSEQ, Centre for Integrative Sequencing, Aarhus University
    Aarhus University)

  • Laurits Skov

    (Bioinformatics Research Centre, Aarhus University
    iSEQ, Centre for Integrative Sequencing, Aarhus University)

  • Kirstine Belling

    (DTU Bioinformatics, Technical University of Denmark)

  • Christian Theil Have

    (Novo Nordisk Foundation Center for Basic Metabolic Research, Section of Metabolic Genetics, University of Copenhagen)

  • Jose M. G. Izarzugaza

    (DTU Bioinformatics, Technical University of Denmark)

  • Marie Grosjean

    (DTU Bioinformatics, Technical University of Denmark)

  • Jette Bork-Jensen

    (Novo Nordisk Foundation Center for Basic Metabolic Research, Section of Metabolic Genetics, University of Copenhagen)

  • Jakob Grove

    (iSEQ, Centre for Integrative Sequencing, Aarhus University
    Aarhus University
    The Lundbeck Foundation Initiative for Integrative Psychiatric Research, iPSYCH)

  • Thomas D. Als

    (iSEQ, Centre for Integrative Sequencing, Aarhus University
    Aarhus University
    The Lundbeck Foundation Initiative for Integrative Psychiatric Research, iPSYCH)

  • Shujia Huang

    (BGI-Shenzhen
    School of Bioscience and Biotechnology, South China University of Technology)

  • Yuqi Chang

    (BGI-Shenzhen)

  • Ruiqi Xu

    (BGI-Europe)

  • Weijian Ye

    (BGI-Europe)

  • Junhua Rao

    (BGI-Europe)

  • Xiaosen Guo

    (BGI-Shenzhen
    Laboratory of Genomics and Molecular Biomedicine, University of Copenhagen)

  • Jihua Sun

    (BGI-Europe
    Novo Nordisk Foundation Center for Basic Metabolic Research, Section of Metabolic Genetics, University of Copenhagen)

  • Hongzhi Cao

    (BGI-Shenzhen)

  • Chen Ye

    (BGI-Shenzhen)

  • Johan van Beusekom

    (DTU Bioinformatics, Technical University of Denmark)

  • Thomas Espeseth

    (University of Oslo
    NORMENT, KG Jebsen Centre for Psychosis Research, University of Bergen)

  • Esben Flindt

    (Laboratory of Genomics and Molecular Biomedicine, University of Copenhagen)

  • Rune M. Friborg

    (Bioinformatics Research Centre, Aarhus University
    iSEQ, Centre for Integrative Sequencing, Aarhus University)

  • Anders E. Halager

    (Bioinformatics Research Centre, Aarhus University
    iSEQ, Centre for Integrative Sequencing, Aarhus University)

  • Stephanie Le Hellard

    (NORMENT, KG Jebsen Centre for Psychosis Research, University of Bergen
    Dr E. Martens Research Group of Biological Psychiatry, Center for Medical Genetics and Molecular Medicine, Haukeland University Hospital)

  • Christina M. Hultman

    (Karolinska Institutet)

  • Francesco Lescai

    (iSEQ, Centre for Integrative Sequencing, Aarhus University
    Aarhus University
    The Lundbeck Foundation Initiative for Integrative Psychiatric Research, iPSYCH)

  • Shengting Li

    (iSEQ, Centre for Integrative Sequencing, Aarhus University
    Aarhus University
    The Lundbeck Foundation Initiative for Integrative Psychiatric Research, iPSYCH)

  • Ole Lund

    (DTU Bioinformatics, Technical University of Denmark)

  • Peter Løngren

    (DTU Bioinformatics, Technical University of Denmark)

  • Thomas Mailund

    (Bioinformatics Research Centre, Aarhus University
    iSEQ, Centre for Integrative Sequencing, Aarhus University)

  • Maria Luisa Matey-Hernandez

    (DTU Bioinformatics, Technical University of Denmark)

  • Ole Mors

    (iSEQ, Centre for Integrative Sequencing, Aarhus University
    Aarhus University
    The Lundbeck Foundation Initiative for Integrative Psychiatric Research, iPSYCH)

  • Christian N. S. Pedersen

    (Bioinformatics Research Centre, Aarhus University
    iSEQ, Centre for Integrative Sequencing, Aarhus University)

  • Thomas Sicheritz-Pontén

    (DTU Bioinformatics, Technical University of Denmark)

  • Patrick Sullivan

    (Karolinska Institutet
    University of North Carolina)

  • Ali Syed

    (DTU Bioinformatics, Technical University of Denmark)

  • David Westergaard

    (DTU Bioinformatics, Technical University of Denmark)

  • Rachita Yadav

    (DTU Bioinformatics, Technical University of Denmark)

  • Ning Li

    (BGI-Europe)

  • Xun Xu

    (BGI-Shenzhen)

  • Torben Hansen

    (Novo Nordisk Foundation Center for Basic Metabolic Research, Section of Metabolic Genetics, University of Copenhagen)

  • Anders Krogh

    (Bioinformatics Centre, University of Copenhagen)

  • Lars Bolund

    (Aarhus University
    BGI-Shenzhen)

  • Thorkild I. A. Sørensen

    (Novo Nordisk Foundation Center for Basic Metabolic Research, Section of Metabolic Genetics, University of Copenhagen
    Bispebjerg and Frederiksberg Hospital, The Capital Region, Copenhagen
    Faculty of Health and Medical Sciences, University of Copenhagen)

  • Oluf Pedersen

    (Novo Nordisk Foundation Center for Basic Metabolic Research, Section of Metabolic Genetics, University of Copenhagen)

  • Ramneek Gupta

    (DTU Bioinformatics, Technical University of Denmark)

  • Simon Rasmussen

    (DTU Bioinformatics, Technical University of Denmark)

  • Søren Besenbacher

    (Bioinformatics Research Centre, Aarhus University
    Aarhus University)

  • Anders D. Børglum

    (iSEQ, Centre for Integrative Sequencing, Aarhus University
    Aarhus University
    The Lundbeck Foundation Initiative for Integrative Psychiatric Research, iPSYCH)

  • Jun Wang

    (iSEQ, Centre for Integrative Sequencing, Aarhus University
    BGI-Shenzhen
    Laboratory of Genomics and Molecular Biomedicine, University of Copenhagen)

  • Hans Eiberg

    (University of Copenhagen)

  • Karsten Kristiansen

    (BGI-Shenzhen
    Laboratory of Genomics and Molecular Biomedicine, University of Copenhagen)

  • Søren Brunak

    (DTU Bioinformatics, Technical University of Denmark
    Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen)

  • Mikkel Heide Schierup

    (Bioinformatics Research Centre, Aarhus University
    iSEQ, Centre for Integrative Sequencing, Aarhus University
    Aarhus University)

Abstract

A report of high-depth, short-read sequencing and de novo assemblies for 150 individuals from 50 parent–offspring trios as part of establishing a population reference genome for the GenomeDenmark project.

Suggested Citation

  • Lasse Maretty & Jacob Malte Jensen & Bent Petersen & Jonas Andreas Sibbesen & Siyang Liu & Palle Villesen & Laurits Skov & Kirstine Belling & Christian Theil Have & Jose M. G. Izarzugaza & Marie Grosj, 2017. "Sequencing and de novo assembly of 150 genomes from Denmark as a population reference," Nature, Nature, vol. 548(7665), pages 87-91, August.
    • Handle: RePEc:nat:nature:v:548:y:2017:i:7665:d:10.1038_nature23264
    DOI: 10.1038/nature23264
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    Citations

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    Cited by:

    1. H. Serhat Tetikol & Deniz Turgut & Kubra Narci & Gungor Budak & Ozem Kalay & Elif Arslan & Sinem Demirkaya-Budak & Alexey Dolgoborodov & Duygu Kabakci-Zorlu & Vladimir Semenyuk & Amit Jain & Brandi N., 2022. "Pan-African genome demonstrates how population-specific genome graphs improve high-throughput sequencing data analysis," Nature Communications, Nature, vol. 13(1), pages 1-11, December.

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