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Transient inhibition of 53BP1 increases the frequency of targeted integration in human hematopoietic stem and progenitor cells

Author

Listed:
  • Ron Baik

    (Stanford University School of Medicine
    Stanford University School of Medicine
    Memorial Sloan Kettering Cancer Center)

  • M. Kyle Cromer

    (Stanford University School of Medicine
    Stanford University School of Medicine)

  • Steve E. Glenn

    (Integrated DNA Technologies, Inc.)

  • Christopher A. Vakulskas

    (Integrated DNA Technologies, Inc.)

  • Kay O. Chmielewski

    (Medical Center – University of Freiburg
    University of Freiburg
    University of Freiburg)

  • Amanda M. Dudek

    (Stanford University School of Medicine
    Stanford University School of Medicine)

  • William N. Feist

    (Stanford University School of Medicine
    Stanford University School of Medicine)

  • Julia Klermund

    (Medical Center – University of Freiburg
    University of Freiburg)

  • Suzette Shipp

    (Stanford University School of Medicine
    Stanford University School of Medicine)

  • Toni Cathomen

    (Medical Center – University of Freiburg
    University of Freiburg)

  • Daniel P. Dever

    (Stanford University School of Medicine
    Stanford University School of Medicine)

  • Matthew H. Porteus

    (Stanford University School of Medicine
    Stanford University School of Medicine)

Abstract

Genome editing by homology directed repair (HDR) is leveraged to precisely modify the genome of therapeutically relevant hematopoietic stem and progenitor cells (HSPCs). Here, we present a new approach to increasing the frequency of HDR in human HSPCs by the delivery of an inhibitor of 53BP1 (named “i53”) as a recombinant peptide. We show that the use of i53 peptide effectively increases the frequency of HDR-mediated genome editing at a variety of therapeutically relevant loci in HSPCs as well as other primary human cell types. We show that incorporating the use of i53 recombinant protein allows high frequencies of HDR while lowering the amounts of AAV6 needed by 8-fold. HDR edited HSPCs were capable of long-term and bi-lineage hematopoietic reconstitution in NSG mice, suggesting that i53 recombinant protein might be safely integrated into the standard CRISPR/AAV6-mediated genome editing protocol to gain greater numbers of edited cells for transplantation of clinically meaningful cell populations.

Suggested Citation

  • Ron Baik & M. Kyle Cromer & Steve E. Glenn & Christopher A. Vakulskas & Kay O. Chmielewski & Amanda M. Dudek & William N. Feist & Julia Klermund & Suzette Shipp & Toni Cathomen & Daniel P. Dever & Mat, 2024. "Transient inhibition of 53BP1 increases the frequency of targeted integration in human hematopoietic stem and progenitor cells," Nature Communications, Nature, vol. 15(1), pages 1-14, December.
  • Handle: RePEc:nat:natcom:v:15:y:2024:i:1:d:10.1038_s41467-023-43413-w
    DOI: 10.1038/s41467-023-43413-w
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    References listed on IDEAS

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    1. Juan A. Perez-Bermejo & Oghene Efagene & William M. Matern & Jeffrey K. Holden & Shaheen Kabir & Glen M. Chew & Gaia Andreoletti & Eniola Catton & Craig L. Ennis & Angelica Garcia & Trevor L. Gerstenb, 2024. "Functional screening in human HSPCs identifies optimized protein-based enhancers of Homology Directed Repair," Nature Communications, Nature, vol. 15(1), pages 1-16, December.

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