IDEAS home Printed from https://ideas.repec.org/a/nat/natcom/v14y2023i1d10.1038_s41467-023-44052-x.html
   My bibliography  Save this article

Structural insights into the regulation, ligand recognition, and oligomerization of bacterial STING

Author

Listed:
  • Mei-Hui Hou

    (Genomics BioSci. & Tech. Co. Ltd.)

  • Yu-Chuan Wang

    (Genomics BioSci. & Tech. Co. Ltd.)

  • Chia-Shin Yang

    (Genomics BioSci. & Tech. Co. Ltd.)

  • Kuei-Fen Liao

    (Hsinchu Science Park)

  • Je-Wei Chang

    (Hsinchu Science Park)

  • Orion Shih

    (Hsinchu Science Park)

  • Yi-Qi Yeh

    (Hsinchu Science Park)

  • Manoj Kumar Sriramoju

    (Academia Sinica)

  • Tzu-Wen Weng

    (Academia Sinica
    National Taiwan University)

  • U-Ser Jeng

    (Hsinchu Science Park
    National Tsing Hua University)

  • Shang-Te Danny Hsu

    (Academia Sinica
    National Taiwan University)

  • Yeh Chen

    (National Chung Hsing University)

Abstract

The cyclic GMP-AMP synthase (cGAS)/stimulator of interferon gene (STING) signaling pathway plays a critical protective role against viral infections. Metazoan STING undergoes multilayers of regulation to ensure specific signal transduction. However, the mechanisms underlying the regulation of bacterial STING remain unclear. In this study, we determined the crystal structure of anti-parallel dimeric form of bacterial STING, which keeps itself in an inactive state by preventing cyclic dinucleotides access. Conformational transition between inactive and active states of bacterial STINGs provides an on-off switch for downstream signaling. Some bacterial STINGs living in extreme environment contain an insertion sequence, which we show codes for an additional long lid that covers the ligand-binding pocket. This lid helps regulate anti-phage activities. Furthermore, bacterial STING can bind cyclic di-AMP in a triangle-shaped conformation via a more compact ligand-binding pocket, forming spiral-shaped protofibrils and higher-order fibril filaments. Based on the differences between cyclic-dinucleotide recognition, oligomerization, and downstream activation of different bacterial STINGs, we proposed a model to explain structure-function evolution of bacterial STINGs.

Suggested Citation

  • Mei-Hui Hou & Yu-Chuan Wang & Chia-Shin Yang & Kuei-Fen Liao & Je-Wei Chang & Orion Shih & Yi-Qi Yeh & Manoj Kumar Sriramoju & Tzu-Wen Weng & U-Ser Jeng & Shang-Te Danny Hsu & Yeh Chen, 2023. "Structural insights into the regulation, ligand recognition, and oligomerization of bacterial STING," Nature Communications, Nature, vol. 14(1), pages 1-15, December.
  • Handle: RePEc:nat:natcom:v:14:y:2023:i:1:d:10.1038_s41467-023-44052-x
    DOI: 10.1038/s41467-023-44052-x
    as

    Download full text from publisher

    File URL: https://www.nature.com/articles/s41467-023-44052-x
    File Function: Abstract
    Download Restriction: no

    File URL: https://libkey.io/10.1038/s41467-023-44052-x?utm_source=ideas
    LibKey link: if access is restricted and if your library uses this service, LibKey will redirect you to where you can use your library subscription to access this item
    ---><---

    References listed on IDEAS

    as
    1. Gaëlle Hogrel & Abbie Guild & Shirley Graham & Hannah Rickman & Sabine Grüschow & Quentin Bertrand & Laura Spagnolo & Malcolm F. White, 2022. "Cyclic nucleotide-induced helical structure activates a TIR immune effector," Nature, Nature, vol. 608(7924), pages 808-812, August.
    2. Tzu-Ping Ko & Yu-Chuan Wang & Chia-Shin Yang & Mei-Hui Hou & Chao-Jung Chen & Yi-Fang Chiu & Yeh Chen, 2022. "Crystal structure and functional implication of bacterial STING," Nature Communications, Nature, vol. 13(1), pages 1-13, December.
    3. Benjamin R. Morehouse & Apurva A. Govande & Adi Millman & Alexander F. A. Keszei & Brianna Lowey & Gal Ofir & Sichen Shao & Rotem Sorek & Philip J. Kranzusch, 2020. "STING cyclic dinucleotide sensing originated in bacteria," Nature, Nature, vol. 586(7829), pages 429-433, October.
    4. Cheng-Yu Huang & Piotr Draczkowski & Yong-Sheng Wang & Chia-Yu Chang & Yu-Chun Chien & Yun-Han Cheng & Yi-Min Wu & Chun-Hsiung Wang & Yuan-Chih Chang & Yen-Chen Chang & Tzu-Jing Yang & Yu-Xi Tsai & Ka, 2022. "In situ structure and dynamics of an alphacoronavirus spike protein by cryo-ET and cryo-EM," Nature Communications, Nature, vol. 13(1), pages 1-16, December.
    Full references (including those not matched with items on IDEAS)

    Most related items

    These are the items that most often cite the same works as this one and are cited by the same works as this one.
    1. Chia-Shin Yang & Tzu-Ping Ko & Chao-Jung Chen & Mei-Hui Hou & Yu-Chuan Wang & Yeh Chen, 2023. "Crystal structure and functional implications of cyclic di-pyrimidine-synthesizing cGAS/DncV-like nucleotidyltransferases," Nature Communications, Nature, vol. 14(1), pages 1-14, December.
    2. Xiangkai Zhen & Xiaolong Xu & Le Ye & Song Xie & Zhijie Huang & Sheng Yang & Yanhui Wang & Jinyu Li & Feng Long & Songying Ouyang, 2024. "Structural basis of antiphage immunity generated by a prokaryotic Argonaute-associated SPARSA system," Nature Communications, Nature, vol. 15(1), pages 1-13, December.
    3. Shirin Fatma & Arpita Chakravarti & Xuankun Zeng & Raven H. Huang, 2021. "Molecular mechanisms of the CdnG-Cap5 antiphage defense system employing 3′,2′-cGAMP as the second messenger," Nature Communications, Nature, vol. 12(1), pages 1-9, December.
    4. Elin Movert & Jaume Salgado Bolarin & Christine Valfridsson & Jorge Velarde & Steinar Skrede & Michael Nekludov & Ole Hyldegaard & Per Arnell & Mattias Svensson & Anna Norrby-Teglund & Kyu Hong Cho & , 2023. "Interplay between human STING genotype and bacterial NADase activity regulates inter-individual disease variability," Nature Communications, Nature, vol. 14(1), pages 1-10, December.
    5. Lina Wang & Siru Li & Kai Wang & Na Wang & Qiaoling Liu & Zhen Sun & Li Wang & Lulu Wang & Quentin Liu & Chengli Song & Caigang Liu & Qingkai Yang, 2022. "DNA mechanical flexibility controls DNA potential to activate cGAS-mediated immune surveillance," Nature Communications, Nature, vol. 13(1), pages 1-18, December.
    6. David Chmielewski & Eric A. Wilson & Grigore Pintilie & Peng Zhao & Muyuan Chen & Michael F. Schmid & Graham Simmons & Lance Wells & Jing Jin & Abhishek Singharoy & Wah Chiu, 2023. "Structural insights into the modulation of coronavirus spike tilting and infectivity by hinge glycans," Nature Communications, Nature, vol. 14(1), pages 1-15, December.
    7. Hang Yin & Xuzichao Li & Xiaoshen Wang & Chendi Zhang & Jiaqi Gao & Guimei Yu & Qiuqiu He & Jie Yang & Xiang Liu & Yong Wei & Zhuang Li & Heng Zhang, 2024. "Insights into the modulation of bacterial NADase activity by phage proteins," Nature Communications, Nature, vol. 15(1), pages 1-12, December.
    8. Matteo Gentili & Bingxu Liu & Malvina Papanastasiou & Deborah Dele-Oni & Marc A. Schwartz & Rebecca J. Carlson & Aziz M. Al’Khafaji & Karsten Krug & Adam Brown & John G. Doench & Steven A. Carr & Nir , 2023. "ESCRT-dependent STING degradation inhibits steady-state and cGAMP-induced signalling," Nature Communications, Nature, vol. 14(1), pages 1-22, December.
    9. Jiafeng Huang & Keli Zhu & Yina Gao & Feng Ye & Zhaolong Li & Yao Ge & Songqing Liu & Jing Yang & Ang Gao, 2024. "Molecular basis of bacterial DSR2 anti-phage defense and viral immune evasion," Nature Communications, Nature, vol. 15(1), pages 1-11, December.

    More about this item

    Statistics

    Access and download statistics

    Corrections

    All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:nat:natcom:v:14:y:2023:i:1:d:10.1038_s41467-023-44052-x. See general information about how to correct material in RePEc.

    If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.

    If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .

    If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.

    For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: Sonal Shukla or Springer Nature Abstracting and Indexing (email available below). General contact details of provider: http://www.nature.com .

    Please note that corrections may take a couple of weeks to filter through the various RePEc services.

    IDEAS is a RePEc service. RePEc uses bibliographic data supplied by the respective publishers.