PAPγ associates with PAXT nuclear exosome to control the abundance of PROMPT ncRNAs
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DOI: 10.1038/s41467-023-42620-9
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- Albert E. Almada & Xuebing Wu & Andrea J. Kriz & Christopher B. Burge & Phillip A. Sharp, 2013. "Promoter directionality is controlled by U1 snRNP and polyadenylation signals," Nature, Nature, vol. 499(7458), pages 360-363, July.
- Nikolay Dobrev & Yasar Luqman Ahmed & Anusree Sivadas & Komal Soni & Tamás Fischer & Irmgard Sinning, 2021. "The zinc-finger protein Red1 orchestrates MTREC submodules and binds the Mtl1 helicase arch domain," Nature Communications, Nature, vol. 12(1), pages 1-13, December.
- Michael Lawrence & Wolfgang Huber & Hervé Pagès & Patrick Aboyoun & Marc Carlson & Robert Gentleman & Martin T Morgan & Vincent J Carey, 2013. "Software for Computing and Annotating Genomic Ranges," PLOS Computational Biology, Public Library of Science, vol. 9(8), pages 1-10, August.
- Robin Andersson & Claudia Gebhard & Irene Miguel-Escalada & Ilka Hoof & Jette Bornholdt & Mette Boyd & Yun Chen & Xiaobei Zhao & Christian Schmidl & Takahiro Suzuki & Evgenia Ntini & Erik Arner & Eivi, 2014. "An atlas of active enhancers across human cell types and tissues," Nature, Nature, vol. 507(7493), pages 455-461, March.
- Helen Neil & Christophe Malabat & Yves d’Aubenton-Carafa & Zhenyu Xu & Lars M. Steinmetz & Alain Jacquier, 2009. "Widespread bidirectional promoters are the major source of cryptic transcripts in yeast," Nature, Nature, vol. 457(7232), pages 1038-1042, February.
- Jérémy Dufourt & Gwénaëlle Bontonou & Aymeric Chartier & Camille Jahan & Anne-Cécile Meunier & Stéphanie Pierson & Paul F. Harrison & Catherine Papin & Traude H. Beilharz & Martine Simonelig, 2017. "piRNAs and Aubergine cooperate with Wispy poly(A) polymerase to stabilize mRNAs in the germ plasm," Nature Communications, Nature, vol. 8(1), pages 1-12, December.
- Komal Soni & Anusree Sivadas & Attila Horvath & Nikolay Dobrev & Rippei Hayashi & Leo Kiss & Bernd Simon & Klemens Wild & Irmgard Sinning & Tamás Fischer, 2023. "Mechanistic insights into RNA surveillance by the canonical poly(A) polymerase Pla1 of the MTREC complex," Nature Communications, Nature, vol. 14(1), pages 1-20, December.
- Robin Andersson & Peter Refsing Andersen & Eivind Valen & Leighton J. Core & Jette Bornholdt & Mette Boyd & Torben Heick Jensen & Albin Sandelin, 2014. "Nuclear stability and transcriptional directionality separate functionally distinct RNA species," Nature Communications, Nature, vol. 5(1), pages 1-10, December.
- Fan Yang & Bogdan Tanasa & Rudi Micheletti & Kenneth A. Ohgi & Aneel K. Aggarwal & Michael G. Rosenfeld, 2021. "Shape of promoter antisense RNAs regulates ligand-induced transcription activation," Nature, Nature, vol. 595(7867), pages 444-449, July.
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