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Variant calling from scRNA-seq data allows the assessment of cellular identity in patient-derived cell lines

Author

Listed:
  • Daniele Ramazzotti

    (Univ. of Milan-Bicocca)

  • Fabrizio Angaroni

    (Univ. of Milan-Bicocca)

  • Davide Maspero

    (Univ. of Milan-Bicocca
    National Research Council (IBFM-CNR))

  • Gianluca Ascolani

    (Univ. of Milan-Bicocca)

  • Isabella Castiglioni

    (Univ. of Milan-Bicocca)

  • Rocco Piazza

    (Univ. of Milan-Bicocca
    Biostatistics and Bioimaging Centre – B4)

  • Marco Antoniotti

    (Univ. of Milan-Bicocca
    Biostatistics and Bioimaging Centre – B4)

  • Alex Graudenzi

    (Univ. of Milan-Bicocca
    National Research Council (IBFM-CNR)
    Biostatistics and Bioimaging Centre – B4)

Abstract

No abstract is available for this item.

Suggested Citation

  • Daniele Ramazzotti & Fabrizio Angaroni & Davide Maspero & Gianluca Ascolani & Isabella Castiglioni & Rocco Piazza & Marco Antoniotti & Alex Graudenzi, 2022. "Variant calling from scRNA-seq data allows the assessment of cellular identity in patient-derived cell lines," Nature Communications, Nature, vol. 13(1), pages 1-3, December.
    • Handle: RePEc:nat:natcom:v:13:y:2022:i:1:d:10.1038_s41467-022-30230-w
    DOI: 10.1038/s41467-022-30230-w
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    References listed on IDEAS

    as
    1. Anna S. Nam & Kyu-Tae Kim & Ronan Chaligne & Franco Izzo & Chelston Ang & Justin Taylor & Robert M. Myers & Ghaith Abu-Zeinah & Ryan Brand & Nathaniel D. Omans & Alicia Alonso & Caroline Sheridan & Ma, 2019. "Somatic mutations and cell identity linked by Genotyping of Transcriptomes," Nature, Nature, vol. 571(7765), pages 355-360, July.
    2. Ankur Sharma & Elaine Yiqun Cao & Vibhor Kumar & Xiaoqian Zhang & Hui Sun Leong & Angeline Mei Lin Wong & Neeraja Ramakrishnan & Muhammad Hakimullah & Hui Min Vivian Teo & Fui Teen Chong & Shumei Chia, 2018. "Longitudinal single-cell RNA sequencing of patient-derived primary cells reveals drug-induced infidelity in stem cell hierarchy," Nature Communications, Nature, vol. 9(1), pages 1-17, December.
    3. Shumei Chia & Joo-Leng Low & Xiaoqian Zhang & Xue-Lin Kwang & Fui-Teen Chong & Ankur Sharma & Denis Bertrand & Shen Yon Toh & Hui-Sun Leong & Matan T. Thangavelu & Jacqueline S. G. Hwang & Kok-Hing Li, 2017. "Phenotype-driven precision oncology as a guide for clinical decisions one patient at a time," Nature Communications, Nature, vol. 8(1), pages 1-12, December.
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    Cited by:

    1. Junyi Chen & Xiaoying Wang & Anjun Ma & Qi-En Wang & Bingqiang Liu & Lang Li & Dong Xu & Qin Ma, 2022. "Deep transfer learning of cancer drug responses by integrating bulk and single-cell RNA-seq data," Nature Communications, Nature, vol. 13(1), pages 1-13, December.

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