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SPEN is required for Xist upregulation during initiation of X chromosome inactivation

Author

Listed:
  • Teresa Robert-Finestra

    (Erasmus University Medical Center, Oncode Institute)

  • Beatrice F. Tan

    (Erasmus University Medical Center, Oncode Institute)

  • Hegias Mira-Bontenbal

    (Erasmus University Medical Center, Oncode Institute)

  • Erika Timmers

    (Erasmus University Medical Center, Oncode Institute)

  • Cristina Gontan

    (Erasmus University Medical Center, Oncode Institute)

  • Sarra Merzouk

    (Erasmus University Medical Center, Oncode Institute)

  • Benedetto Daniele Giaimo

    (University of Giessen)

  • François Dossin

    (European Molecular Biology Laboratory, Director’s Research)

  • Wilfred F. J. IJcken

    (Erasmus University Medical Center)

  • John W. M. Martens

    (Erasmus MC Cancer Institute and Cancer Genomics Netherlands, Erasmus University Medical Center)

  • Tilman Borggrefe

    (University of Giessen)

  • Edith Heard

    (European Molecular Biology Laboratory, Director’s Research)

  • Joost Gribnau

    (Erasmus University Medical Center, Oncode Institute)

Abstract

At initiation of X chromosome inactivation (XCI), Xist is monoallelically upregulated from the future inactive X (Xi) chromosome, overcoming repression by its antisense transcript Tsix. Xist recruits various chromatin remodelers, amongst them SPEN, which are involved in silencing of X-linked genes in cis and establishment of the Xi. Here, we show that SPEN plays an important role in initiation of XCI. Spen null female mouse embryonic stem cells (ESCs) are defective in Xist upregulation upon differentiation. We find that Xist-mediated SPEN recruitment to the Xi chromosome happens very early in XCI, and that SPEN-mediated silencing of the Tsix promoter is required for Xist upregulation. Accordingly, failed Xist upregulation in Spen−/− ESCs can be rescued by concomitant removal of Tsix. These findings indicate that SPEN is not only required for the establishment of the Xi, but is also crucial in initiation of the XCI process.

Suggested Citation

  • Teresa Robert-Finestra & Beatrice F. Tan & Hegias Mira-Bontenbal & Erika Timmers & Cristina Gontan & Sarra Merzouk & Benedetto Daniele Giaimo & François Dossin & Wilfred F. J. IJcken & John W. M. Mart, 2021. "SPEN is required for Xist upregulation during initiation of X chromosome inactivation," Nature Communications, Nature, vol. 12(1), pages 1-13, December.
  • Handle: RePEc:nat:natcom:v:12:y:2021:i:1:d:10.1038_s41467-021-27294-5
    DOI: 10.1038/s41467-021-27294-5
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    1. Pablo Navarro & Andrew Oldfield & Julie Legoupi & Nicola Festuccia & Agnès Dubois & Mikael Attia & Jon Schoorlemmer & Claire Rougeulle & Ian Chambers & Philip Avner, 2010. "Molecular coupling of Tsix regulation and pluripotency," Nature, Nature, vol. 468(7322), pages 457-460, November.
    2. Mary E. Donohoe & Susana S. Silva & Stefan F. Pinter & Na Xu & Jeannie T. Lee, 2009. "The pluripotency factor Oct4 interacts with Ctcf and also controls X-chromosome pairing and counting," Nature, Nature, vol. 460(7251), pages 128-132, July.
    3. Colleen A. McHugh & Chun-Kan Chen & Amy Chow & Christine F. Surka & Christina Tran & Patrick McDonel & Amy Pandya-Jones & Mario Blanco & Christina Burghard & Annie Moradian & Michael J. Sweredoski & A, 2015. "The Xist lncRNA interacts directly with SHARP to silence transcription through HDAC3," Nature, Nature, vol. 521(7551), pages 232-236, May.
    4. Tatyana B. Nesterova & Guifeng Wei & Heather Coker & Greta Pintacuda & Joseph S. Bowness & Tianyi Zhang & Mafalda Almeida & Bianca Bloechl & Benoit Moindrot & Emma J. Carter & Ines Alvarez Rodrigo & Q, 2019. "Systematic allelic analysis defines the interplay of key pathways in X chromosome inactivation," Nature Communications, Nature, vol. 10(1), pages 1-15, December.
    5. Cristina Gontan & Eskeatnaf Mulugeta Achame & Jeroen Demmers & Tahsin Stefan Barakat & Eveline Rentmeester & Wilfred van IJcken & J. Anton Grootegoed & Joost Gribnau, 2012. "RNF12 initiates X-chromosome inactivation by targeting REX1 for degradation," Nature, Nature, vol. 485(7398), pages 386-390, May.
    6. Agnese Loda & Johannes H. Brandsma & Ivaylo Vassilev & Nicolas Servant & Friedemann Loos & Azadeh Amirnasr & Erik Splinter & Emmanuel Barillot & Raymond A. Poot & Edith Heard & Joost Gribnau, 2017. "Genetic and epigenetic features direct differential efficiency of Xist-mediated silencing at X-chromosomal and autosomal locations," Nature Communications, Nature, vol. 8(1), pages 1-16, December.
    7. Thomas M. Keane & Leo Goodstadt & Petr Danecek & Michael A. White & Kim Wong & Binnaz Yalcin & Andreas Heger & Avigail Agam & Guy Slater & Martin Goodson & Nicholas A. Furlotte & Eleazar Eskin & Chris, 2011. "Mouse genomic variation and its effect on phenotypes and gene regulation," Nature, Nature, vol. 477(7364), pages 289-294, September.
    8. François Dossin & Inês Pinheiro & Jan J. Żylicz & Julia Roensch & Samuel Collombet & Agnès Le Saux & Tomasz Chelmicki & Mikaël Attia & Varun Kapoor & Ye Zhan & Florent Dingli & Damarys Loew & Thomas M, 2020. "SPEN integrates transcriptional and epigenetic control of X-inactivation," Nature, Nature, vol. 578(7795), pages 455-460, February.
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    1. Milan Kumar Samanta & Srimonta Gayen & Clair Harris & Emily Maclary & Yumie Murata-Nakamura & Rebecca M. Malcore & Robert S. Porter & Patricia M. Garay & Christina N. Vallianatos & Paul B. Samollow & , 2022. "Activation of Xist by an evolutionarily conserved function of KDM5C demethylase," Nature Communications, Nature, vol. 13(1), pages 1-16, December.

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