IDEAS home Printed from https://ideas.repec.org/a/nat/natcom/v12y2021i1d10.1038_s41467-021-27147-1.html
   My bibliography  Save this article

Structure of the class C orphan GPCR GPR158 in complex with RGS7-Gβ5

Author

Listed:
  • Eunyoung Jeong

    (Pohang University of Science and Technology)

  • Yoojoong Kim

    (Pohang University of Science and Technology)

  • Jihong Jeong

    (Pohang University of Science and Technology)

  • Yunje Cho

    (Pohang University of Science and Technology)

Abstract

GPR158, a class C orphan GPCR, functions in cognition, stress-induced mood control, and synaptic development. Among class C GPCRs, GPR158 is unique as it lacks a Venus flytrap-fold ligand-binding domain and terminates Gαi/o protein signaling through the RGS7-Gβ5 heterodimer. Here, we report the cryo-EM structures of GPR158 alone and in complex with one or two RGS7-Gβ5 heterodimers. GPR158 dimerizes through Per-Arnt-Sim-fold extracellular and transmembrane (TM) domains connected by an epidermal growth factor-like linker. The TM domain (TMD) reflects both inactive and active states of other class C GPCRs: a compact intracellular TMD, conformations of the two intracellular loops (ICLs) and the TMD interface formed by TM4/5. The ICL2, ICL3, TM3, and first helix of the cytoplasmic coiled-coil provide a platform for the DHEX domain of one RGS7 and the second helix recruits another RGS7. The unique features of the RGS7-binding site underlie the selectivity of GPR158 for RGS7.

Suggested Citation

  • Eunyoung Jeong & Yoojoong Kim & Jihong Jeong & Yunje Cho, 2021. "Structure of the class C orphan GPCR GPR158 in complex with RGS7-Gβ5," Nature Communications, Nature, vol. 12(1), pages 1-11, December.
  • Handle: RePEc:nat:natcom:v:12:y:2021:i:1:d:10.1038_s41467-021-27147-1
    DOI: 10.1038/s41467-021-27147-1
    as

    Download full text from publisher

    File URL: https://www.nature.com/articles/s41467-021-27147-1
    File Function: Abstract
    Download Restriction: no

    File URL: https://libkey.io/10.1038/s41467-021-27147-1?utm_source=ideas
    LibKey link: if access is restricted and if your library uses this service, LibKey will redirect you to where you can use your library subscription to access this item
    ---><---

    References listed on IDEAS

    as
    1. Cangsong Shen & Chunyou Mao & Chanjuan Xu & Nan Jin & Huibing Zhang & Dan-Dan Shen & Qingya Shen & Xiaomei Wang & Tingjun Hou & Zhong Chen & Philippe Rondard & Jean-Philippe Pin & Yan Zhang & Jianfeng, 2021. "Structural basis of GABAB receptor–Gi protein coupling," Nature, Nature, vol. 594(7864), pages 594-598, June.
    2. Antoine Koehl & Hongli Hu & Dan Feng & Bingfa Sun & Yan Zhang & Michael J. Robertson & Matthew Chu & Tong Sun Kobilka & Toon Laeremans & Jan Steyaert & Jeffrey Tarrasch & Somnath Dutta & Rasmus Fonsec, 2019. "Author Correction: Structural insights into the activation of metabotropic glutamate receptors," Nature, Nature, vol. 567(7747), pages 10-10, March.
    3. Antoine Koehl & Hongli Hu & Dan Feng & Bingfa Sun & Yan Zhang & Michael J. Robertson & Matthew Chu & Tong Sun Kobilka & Toon Laeremans & Jan Steyaert & Jeffrey Tarrasch & Somnath Dutta & Rasmus Fonsec, 2019. "Structural insights into the activation of metabotropic glutamate receptors," Nature, Nature, vol. 566(7742), pages 79-84, February.
    4. Hamidreza Shaye & Andrii Ishchenko & Jordy Homing Lam & Gye Won Han & Li Xue & Philippe Rondard & Jean-Philippe Pin & Vsevolod Katritch & Cornelius Gati & Vadim Cherezov, 2020. "Structural basis of the activation of a metabotropic GABA receptor," Nature, Nature, vol. 584(7820), pages 298-303, August.
    5. Joseph S. Pak & Zachary J. DeLoughery & Jing Wang & Nischal Acharya & Yeonwoo Park & Alexander Jaworski & Engin Özkan, 2020. "NELL2-Robo3 complex structure reveals mechanisms of receptor activation for axon guidance," Nature Communications, Nature, vol. 11(1), pages 1-14, December.
    6. Xi Lin & Mingyue Li & Niandong Wang & Yiran Wu & Zhipu Luo & Shimeng Guo & Gye-Won Han & Shaobai Li & Yang Yue & Xiaohu Wei & Xin Xie & Yong Chen & Suwen Zhao & Jian Wu & Ming Lei & Fei Xu, 2020. "Structural basis of ligand recognition and self-activation of orphan GPR52," Nature, Nature, vol. 579(7797), pages 152-157, March.
    7. Jinseo Park & Ziao Fu & Aurel Frangaj & Jonathan Liu & Lidia Mosyak & Tong Shen & Vesna N. Slavkovich & Kimberly M. Ray & Jaume Taura & Baohua Cao & Yong Geng & Hao Zuo & Yongjun Kou & Robert Grassucc, 2020. "Structure of human GABAB receptor in an inactive state," Nature, Nature, vol. 584(7820), pages 304-309, August.
    8. Benjamin Stauch & Linda C. Johansson & John D. McCorvy & Nilkanth Patel & Gye Won Han & Xi-Ping Huang & Cornelius Gati & Alexander Batyuk & Samuel T. Slocum & Andrii Ishchenko & Wolfgang Brehm & Thoma, 2019. "Structural basis of ligand recognition at the human MT1 melatonin receptor," Nature, Nature, vol. 569(7755), pages 284-288, May.
    9. Benjamin Stauch & Linda C. Johansson & John D. McCorvy & Nilkanth Patel & Gye Won Han & Xi-Ping Huang & Cornelius Gati & Alexander Batyuk & Samuel T. Slocum & Andrii Ishchenko & Wolfgang Brehm & Thoma, 2019. "Publisher Correction: Structural basis of ligand recognition at the human MT1 melatonin receptor," Nature, Nature, vol. 569(7756), pages 6-6, May.
    10. Alpay B. Seven & Ximena Barros-Álvarez & Marine Lapeyrière & Makaía M. Papasergi-Scott & Michael J. Robertson & Chensong Zhang & Robert M. Nwokonko & Yang Gao & Justin G. Meyerowitz & Jean-Philippe Ro, 2021. "G-protein activation by a metabotropic glutamate receptor," Nature, Nature, vol. 595(7867), pages 450-454, July.
    11. Andrew S. Doré & Krzysztof Okrasa & Jayesh C. Patel & Maria Serrano-Vega & Kirstie Bennett & Robert M. Cooke & James C. Errey & Ali Jazayeri & Samir Khan & Ben Tehan & Malcolm Weir & Giselle R. Wiggin, 2014. "Structure of class C GPCR metabotropic glutamate receptor 5 transmembrane domain," Nature, Nature, vol. 511(7511), pages 557-562, July.
    12. Vaithish Velazhahan & Ning Ma & Gáspár Pándy-Szekeres & Albert J. Kooistra & Yang Lee & David E. Gloriam & Nagarajan Vaidehi & Christopher G. Tate, 2021. "Structure of the class D GPCR Ste2 dimer coupled to two G proteins," Nature, Nature, vol. 589(7840), pages 148-153, January.
    13. Jinseo Park & Ziao Fu & Aurel Frangaj & Jonathan Liu & Lidia Mosyak & Tong Shen & Vesna N. Slavkovich & Kimberly M. Ray & Jaume Taura & Baohua Cao & Yong Geng & Hao Zuo & Yongjun Kou & Robert Grassucc, 2020. "Author Correction: Structure of human GABAB receptor in an inactive state," Nature, Nature, vol. 583(7818), pages 29-29, July.
    Full references (including those not matched with items on IDEAS)

    Most related items

    These are the items that most often cite the same works as this one and are cited by the same works as this one.
    1. Moon Young Yang & Soo-Kyung Kim & William A. Goddard, 2022. "G protein coupling and activation of the metabotropic GABAB heterodimer," Nature Communications, Nature, vol. 13(1), pages 1-9, December.
    2. Michael R. Schamber & Reza Vafabakhsh, 2022. "Mechanism of sensitivity modulation in the calcium-sensing receptor via electrostatic tuning," Nature Communications, Nature, vol. 13(1), pages 1-14, December.
    3. Marie-Lise Jobin & Sana Siddig & Zsombor Koszegi & Yann Lanoiselée & Vladimir Khayenko & Titiwat Sungkaworn & Christian Werner & Kerstin Seier & Christin Misigaiski & Giovanna Mantovani & Markus Sauer, 2023. "Filamin A organizes γ‑aminobutyric acid type B receptors at the plasma membrane," Nature Communications, Nature, vol. 14(1), pages 1-14, December.
    4. Kaihua Zhang & Hao Wu & Nicholas Hoppe & Aashish Manglik & Yifan Cheng, 2022. "Fusion protein strategies for cryo-EM study of G protein-coupled receptors," Nature Communications, Nature, vol. 13(1), pages 1-11, December.
    5. Chanjuan Xu & Yiwei Zhou & Yuxuan Liu & Li Lin & Peng Liu & Xiaomei Wang & Zhengyuan Xu & Jean-Philippe Pin & Philippe Rondard & Jianfeng Liu, 2024. "Specific pharmacological and Gi/o protein responses of some native GPCRs in neurons," Nature Communications, Nature, vol. 15(1), pages 1-14, December.
    6. Kento Ojima & Wataru Kakegawa & Tokiwa Yamasaki & Yuta Miura & Masayuki Itoh & Yukiko Michibata & Ryou Kubota & Tomohiro Doura & Eriko Miura & Hiroshi Nonaka & Seiya Mizuno & Satoru Takahashi & Michis, 2022. "Coordination chemogenetics for activation of GPCR-type glutamate receptors in brain tissue," Nature Communications, Nature, vol. 13(1), pages 1-17, December.
    7. Janik B. Hedderich & Margherita Persechino & Katharina Becker & Franziska M. Heydenreich & Torben Gutermuth & Michel Bouvier & Moritz Bünemann & Peter Kolb, 2022. "The pocketome of G-protein-coupled receptors reveals previously untargeted allosteric sites," Nature Communications, Nature, vol. 13(1), pages 1-12, December.
    8. Chris Habrian & Naomi Latorraca & Zhu Fu & Ehud Y. Isacoff, 2023. "Homo- and hetero-dimeric subunit interactions set affinity and efficacy in metabotropic glutamate receptors," Nature Communications, Nature, vol. 14(1), pages 1-10, December.
    9. Shota Suzuki & Kotaro Tanaka & Kouki Nishikawa & Hiroshi Suzuki & Atsunori Oshima & Yoshinori Fujiyoshi, 2023. "Structural basis of hydroxycarboxylic acid receptor signaling mechanisms through ligand binding," Nature Communications, Nature, vol. 14(1), pages 1-13, December.
    10. Junke Liu & Hengmin Tang & Chanjuan Xu & Shengnan Zhou & Xunying Zhu & Yuanyuan Li & Laurent Prézeau & Tao Xu & Jean-Philippe Pin & Philippe Rondard & Wei Ji & Jianfeng Liu, 2022. "Biased signaling due to oligomerization of the G protein-coupled platelet-activating factor receptor," Nature Communications, Nature, vol. 13(1), pages 1-16, December.
    11. Yingying Nie & Zeming Qiu & Sijia Chen & Zhao Chen & Xiaocui Song & Yan Ma & Niu Huang & Jason G. Cyster & Sanduo Zheng, 2023. "Specific binding of GPR174 by endogenous lysophosphatidylserine leads to high constitutive Gs signaling," Nature Communications, Nature, vol. 14(1), pages 1-12, December.
    12. T. Bertie Ansell & Wanling Song & Claire E. Coupland & Loic Carrique & Robin A. Corey & Anna L. Duncan & C. Keith Cassidy & Maxwell M. G. Geurts & Tim Rasmussen & Andrew B. Ward & Christian Siebold & , 2023. "LipIDens: simulation assisted interpretation of lipid densities in cryo-EM structures of membrane proteins," Nature Communications, Nature, vol. 14(1), pages 1-14, December.
    13. Jiale Liang & Asuka Inoue & Tatsuya Ikuta & Ruixue Xia & Na Wang & Kouki Kawakami & Zhenmei Xu & Yu Qian & Xinyan Zhu & Anqi Zhang & Changyou Guo & Zhiwei Huang & Yuanzheng He, 2023. "Structural basis of lysophosphatidylserine receptor GPR174 ligand recognition and activation," Nature Communications, Nature, vol. 14(1), pages 1-10, December.
    14. Joshua A. Lees & João M. Dias & Francis Rajamohan & Jean-Philippe Fortin & Rebecca O’Connor & Jimmy X. Kong & Emily A. G. Hughes & Ethan L. Fisher & Jamison B. Tuttle & Gabrielle Lovett & Bethany L. K, 2023. "An inverse agonist of orphan receptor GPR61 acts by a G protein-competitive allosteric mechanism," Nature Communications, Nature, vol. 14(1), pages 1-12, December.
    15. Xiaoting Li & Hao Chang & Jara Bouma & Laura V. Paus & Partha Mukhopadhyay & Janos Paloczi & Mohammed Mustafa & Cas Horst & Sanjay Sunil Kumar & Lijie Wu & Yanan Yu & Richard J. B. H. N. Berg & Antoni, 2023. "Structural basis of selective cannabinoid CB2 receptor activation," Nature Communications, Nature, vol. 14(1), pages 1-16, December.
    16. Xi Lin & Bo Chen & Yiran Wu & Yingqi Han & Ao Qi & Junyan Wang & Zhao Yang & Xiaohu Wei & Tingting Zhao & Lijie Wu & Xin Xie & Jinpeng Sun & Jie Zheng & Suwen Zhao & Fei Xu, 2023. "Cryo-EM structures of orphan GPR21 signaling complexes," Nature Communications, Nature, vol. 14(1), pages 1-12, December.
    17. Chunyou Mao & Mengru Gao & Shao-Kun Zang & Yanqing Zhu & Dan-Dan Shen & Li-Nan Chen & Liu Yang & Zhiwei Wang & Huibing Zhang & Wei-Wei Wang & Qingya Shen & Yanhui Lu & Xin Ma & Yan Zhang, 2023. "Orthosteric and allosteric modulation of human HCAR2 signaling complex," Nature Communications, Nature, vol. 14(1), pages 1-10, December.
    18. Chulwon Choi & Jungnam Bae & Seonghan Kim & Seho Lee & Hyunook Kang & Jinuk Kim & Injin Bang & Kiheon Kim & Won-Ki Huh & Chaok Seok & Hahnbeom Park & Wonpil Im & Hee-Jung Choi, 2023. "Understanding the molecular mechanisms of odorant binding and activation of the human OR52 family," Nature Communications, Nature, vol. 14(1), pages 1-14, December.

    More about this item

    Statistics

    Access and download statistics

    Corrections

    All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:nat:natcom:v:12:y:2021:i:1:d:10.1038_s41467-021-27147-1. See general information about how to correct material in RePEc.

    If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.

    If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .

    If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.

    For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: Sonal Shukla or Springer Nature Abstracting and Indexing (email available below). General contact details of provider: http://www.nature.com .

    Please note that corrections may take a couple of weeks to filter through the various RePEc services.

    IDEAS is a RePEc service. RePEc uses bibliographic data supplied by the respective publishers.