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Environmental DNA allows upscaling spatial patterns of biodiversity in freshwater ecosystems

Author

Listed:
  • Luca Carraro

    (University of Zurich
    Eawag, Swiss Federal Institute of Aquatic Science and Technology)

  • Elvira Mächler

    (University of Zurich
    Eawag, Swiss Federal Institute of Aquatic Science and Technology)

  • Remo Wüthrich

    (University of Zurich
    Eawag, Swiss Federal Institute of Aquatic Science and Technology
    gutwasser GmbH)

  • Florian Altermatt

    (University of Zurich
    Eawag, Swiss Federal Institute of Aquatic Science and Technology
    University Research Priority Programme (URPP) on Global Change and Biodiversity, University of Zurich)

Abstract

The alarming declines of freshwater biodiversity call for efficient biomonitoring at fine spatiotemporal scales, such that conservation measures be grounded upon accurate biodiversity data. Here, we show that combining environmental DNA (eDNA) extracted from stream water samples with models based on hydrological first principles allows upscaling biodiversity estimates for aquatic insects at very high spatial resolution. Our model decouples the diverse upstream contributions to the eDNA data, enabling the reconstruction of taxa distribution patterns. Across a 740-km2 basin, we obtain a space-filling biodiversity prediction at a grain size resolution of 1-km long stream sections. The model’s accuracy in matching direct observations of aquatic insects’ local occurrence ranges between 57–100%. Our results demonstrate how eDNA can be used for high-resolution biodiversity assessments in rivers with minimal prior knowledge of the system. Our approach allows identification of biodiversity hotspots that could be otherwise overlooked, enabling implementation of focused conservation strategies.

Suggested Citation

  • Luca Carraro & Elvira Mächler & Remo Wüthrich & Florian Altermatt, 2020. "Environmental DNA allows upscaling spatial patterns of biodiversity in freshwater ecosystems," Nature Communications, Nature, vol. 11(1), pages 1-12, December.
  • Handle: RePEc:nat:natcom:v:11:y:2020:i:1:d:10.1038_s41467-020-17337-8
    DOI: 10.1038/s41467-020-17337-8
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    Cited by:

    1. Isabel Cantera & Opale Coutant & Céline Jézéquel & Jean-Baptiste Decotte & Tony Dejean & Amaia Iribar & Régis Vigouroux & Alice Valentini & Jérôme Murienne & Sébastien Brosse, 2022. "Low level of anthropization linked to harsh vertebrate biodiversity declines in Amazonia," Nature Communications, Nature, vol. 13(1), pages 1-11, December.

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