IDEAS home Printed from https://ideas.repec.org/a/eee/ecomod/v250y2013icp214-234.html
   My bibliography  Save this article

Evaluating the performance of individual-based animal movement models in novel environments

Author

Listed:
  • Watkins, Katherine Shepard
  • Rose, Kenneth A.

Abstract

Simulating animal movement in spatially explicit individual-based models (IBMs) is both challenging and critically important to accurately estimating population dynamics. A number of different approaches have been developed that make different assumptions about how individuals move in their environment and use different mathematics to translate movement cues into a behavioral response. Properly calibrated movement models should produce realistic movement in both conditions encountered during calibration and in novel conditions; however, most studies to date have not tested movement models in novel conditions. We compared four distinct movement approaches or sub-models (restricted-area search, kinesis, event-based, and run and tumble) using an IBM loosely based on a small pelagic fish (e.g. Engraulidae) that simulated growth, mortality, and movement of a cohort on a 2-dimensional grid. We trained the sub-models with a genetic algorithm in one set of environmental conditions and then tested them in other three environments. The sub-models generally performed well in novel environments, except restricted-area search and event-based that needed to be trained in environments with gradients similar to the test environment. Also, run and tumble produced near-random distributions in all training environments except the one with the steepest habitat quality gradient, and it produced random distributions in all novel test environments. In selecting a movement sub-model, researchers should consider the assumptions of potential sub-models, the observed movement patterns of the species of interest, and the shape and steepness of the underlying habitat quality gradient.

Suggested Citation

  • Watkins, Katherine Shepard & Rose, Kenneth A., 2013. "Evaluating the performance of individual-based animal movement models in novel environments," Ecological Modelling, Elsevier, vol. 250(C), pages 214-234.
  • Handle: RePEc:eee:ecomod:v:250:y:2013:i:c:p:214-234
    DOI: 10.1016/j.ecolmodel.2012.11.011
    as

    Download full text from publisher

    File URL: http://www.sciencedirect.com/science/article/pii/S0304380012005480
    Download Restriction: Full text for ScienceDirect subscribers only

    File URL: https://libkey.io/10.1016/j.ecolmodel.2012.11.011?utm_source=ideas
    LibKey link: if access is restricted and if your library uses this service, LibKey will redirect you to where you can use your library subscription to access this item
    ---><---

    As the access to this document is restricted, you may want to search for a different version of it.

    References listed on IDEAS

    as
    1. Conner, Mary M. & Ebinger, Michael R. & Knowlton, Frederick F., 2008. "Evaluating coyote management strategies using a spatially explicit, individual-based, socially structured population model," Ecological Modelling, Elsevier, vol. 219(1), pages 234-247.
    2. Duboz, Raphaël & Versmisse, David & Travers, Morgane & Ramat, Eric & Shin, Yunne-Jai, 2010. "Application of an evolutionary algorithm to the inverse parameter estimation of an individual-based model," Ecological Modelling, Elsevier, vol. 221(5), pages 840-849.
    3. Okunishi, Takeshi & Yamanaka, Yasuhiro & Ito, Shin-ichi, 2009. "A simulation model for Japanese sardine (Sardinops melanostictus) migrations in the western North Pacific," Ecological Modelling, Elsevier, vol. 220(4), pages 462-479.
    4. Campbell, Matthew D. & Rose, Kenneth & Boswell, Kevin & Cowan, James, 2011. "Individual-based modeling of an artificial reef fish community: Effects of habitat quantity and degree of refuge," Ecological Modelling, Elsevier, vol. 222(23), pages 3895-3909.
    Full references (including those not matched with items on IDEAS)

    Citations

    Citations are extracted by the CitEc Project, subscribe to its RSS feed for this item.
    as


    Cited by:

    1. Xu, Yi & Chai, Fei & Rose, Kenneth A. & Ñiquen C., Miguel & Chavez, Francisco P., 2013. "Environmental influences on the interannual variation and spatial distribution of Peruvian anchovy (Engraulis ringens) population dynamics from 1991 to 2007: A three-dimensional modeling study," Ecological Modelling, Elsevier, vol. 264(C), pages 64-82.
    2. Watkins, Katherine Shepard & Rose, Kenneth A., 2017. "Simulating individual-based movement in dynamic environments," Ecological Modelling, Elsevier, vol. 356(C), pages 59-72.
    3. Morrice, Katherine J. & Baptista, António M. & Burke, Brian J., 2020. "Environmental and behavioral controls on juvenile Chinook salmon migration pathways in the Columbia River estuary," Ecological Modelling, Elsevier, vol. 427(C).
    4. Chloe Bracis & Eliezer Gurarie & Bram Van Moorter & R Andrew Goodwin, 2015. "Memory Effects on Movement Behavior in Animal Foraging," PLOS ONE, Public Library of Science, vol. 10(8), pages 1-21, August.
    5. Politikos, Dimitrios V. & Huret, Martin & Petitgas, Pierre, 2015. "A coupled movement and bioenergetics model to explore the spawning migration of anchovy in the Bay of Biscay," Ecological Modelling, Elsevier, vol. 313(C), pages 212-222.
    6. Fulford, R.S. & Peterson, M.S. & Wu, W. & Grammer, P.O., 2014. "An ecological model of the habitat mosaic in estuarine nursery areas: Part II—Projecting effects of sea level rise on fish production," Ecological Modelling, Elsevier, vol. 273(C), pages 96-108.

    Most related items

    These are the items that most often cite the same works as this one and are cited by the same works as this one.
    1. Watkins, Katherine Shepard & Rose, Kenneth A., 2017. "Simulating individual-based movement in dynamic environments," Ecological Modelling, Elsevier, vol. 356(C), pages 59-72.
    2. McLane, Adam J. & Semeniuk, Christina & McDermid, Gregory J. & Marceau, Danielle J., 2011. "The role of agent-based models in wildlife ecology and management," Ecological Modelling, Elsevier, vol. 222(8), pages 1544-1556.
    3. Haythorne, Sean & Skabar, Andrew, 2013. "An improved pattern-guided evolution approach for the development of adaptive individual-based ecological models," Ecological Modelling, Elsevier, vol. 252(C), pages 72-82.
    4. Xing, Lei & Zhang, Chongliang & Chen, Yong & Shin, Yunne-Jai & Verley, Philippe & Yu, Haiqing & Ren, Yiping, 2017. "An individual-based model for simulating the ecosystem dynamics of Jiaozhou Bay, China," Ecological Modelling, Elsevier, vol. 360(C), pages 120-131.
    5. Politikos, Dimitrios V. & Huret, Martin & Petitgas, Pierre, 2015. "A coupled movement and bioenergetics model to explore the spawning migration of anchovy in the Bay of Biscay," Ecological Modelling, Elsevier, vol. 313(C), pages 212-222.
    6. Guichard, S. & Kriticos, D.J. & Kean, J.M. & Worner, S.P., 2010. "Modelling pheromone anemotaxis for biosecurity surveillance: Moth movement patterns reveal a downwind component of anemotaxis," Ecological Modelling, Elsevier, vol. 221(23), pages 2801-2807.
    7. Roa-Ureta, Ruben H. & Santos, Miguel N. & Leitão, Francisco, 2019. "Modelling long-term fisheries data to resolve the attraction versus production dilemma of artificial reefs," Ecological Modelling, Elsevier, vol. 407(C), pages 1-1.
    8. Takeshi Okunishi & Shin-ichi Ito & Taketo Hashioka & Takashi Sakamoto & Naoki Yoshie & Hiroshi Sumata & Yumiko Yara & Naosuke Okada & Yasuhiro Yamanaka, 2012. "Impacts of climate change on growth, migration and recruitment success of Japanese sardine (Sardinops melanostictus) in the western North Pacific," Climatic Change, Springer, vol. 115(3), pages 485-503, December.
    9. Kakehi, Shigeho & Abo, Jun-ichi & Miyamoto, Hiroomi & Fuji, Taiki & Watanabe, Kazuyoshi & Yamashita, Hideyuki & Suyama, Satoshi, 2020. "Forecasting Pacific saury (Cololabis saira) fishing grounds off Japan using a migration model driven by an ocean circulation model," Ecological Modelling, Elsevier, vol. 431(C).
    10. Marzloff, Martin P. & Johnson, Craig R. & Little, L. Rich & Soulié, Jean-Christophe & Ling, Scott D. & Frusher, Stewart D., 2013. "Sensitivity analysis and pattern-oriented validation of TRITON, a model with alternative community states: Insights on temperate rocky reefs dynamics," Ecological Modelling, Elsevier, vol. 258(C), pages 16-32.
    11. Tawfik Guesmi & Badr M. Alshammari & Yasser Almalaq & Ayoob Alateeq & Khalid Alqunun, 2021. "New Coordinated Tuning of SVC and PSSs in Multimachine Power System Using Coyote Optimization Algorithm," Sustainability, MDPI, vol. 13(6), pages 1-18, March.
    12. Bracis, Chloe & Lehuta, Sigrid & Savina-Rolland, Marie & Travers-Trolet, Morgane & Girardin, Raphaël, 2020. "Improving confidence in complex ecosystem models: The sensitivity analysis of an Atlantis ecosystem model," Ecological Modelling, Elsevier, vol. 431(C).
    13. Stenglein, Jennifer L. & Gilbert, Jonathan H. & Wydeven, Adrian P. & Van Deelen, Timothy R., 2015. "An individual-based model for southern Lake Superior wolves: A tool to explore the effect of human-caused mortality on a landscape of risk," Ecological Modelling, Elsevier, vol. 302(C), pages 13-24.
    14. Mori, Kensuke & Massolo, Alessandro & Marceau, Danielle & Stefanakis, Emmanuel, 2023. "Modelling the epidemiology of zoonotic parasites transmitted through a predator-prey system in urban landscapes: The Calgary Echinococcus multilocularis Coyote Agent-based model (CEmCA)," Ecological Modelling, Elsevier, vol. 475(C).
    15. Hamza, Faseela & M, Anju & Valsala, Vinu & R, Smitha B., 2021. "A bioenergetics model for seasonal growth of Indian oil sardine (Sardinella longiceps) in the Indian west coast," Ecological Modelling, Elsevier, vol. 456(C).
    16. Lewis, D.L. & Breck, S.W. & Wilson, K.R. & Webb, C.T., 2014. "Modeling black bear population dynamics in a human-dominated stochastic environment," Ecological Modelling, Elsevier, vol. 294(C), pages 51-58.
    17. Athanasios Gkanasos & Stylianos Somarakis & Kostas Tsiaras & Dimitrios Kleftogiannis & Marianna Giannoulaki & Eudoxia Schismenou & Sarantis Sofianos & George Triantafyllou, 2019. "Development, application and evaluation of a 1-D full life cycle anchovy and sardine model for the North Aegean Sea (Eastern Mediterranean)," PLOS ONE, Public Library of Science, vol. 14(8), pages 1-24, August.
    18. Pata, Patrick R. & Yñiguez, Aletta T. & Deauna, Josephine Dianne L. & De Guzman, Asuncion B. & Jimenez, Cesaria R. & Rosario, Roselle T. Borja-Del & Villanoy, Cesar L., 2021. "Insights into the environmental conditions contributing to variability in the larval recruitment of the tropical sardine Sardinella lemuru," Ecological Modelling, Elsevier, vol. 451(C).
    19. Clara Schmitt & Sébastien Rey-Coyrehourcq & Romain Reuillon & Denise Pumain, 2015. "Half a Billion Simulations: Evolutionary Algorithms and Distributed Computing for Calibrating the Simpoplocal Geographical Model," Environment and Planning B, , vol. 42(2), pages 300-315, April.
    20. Hill Cruz, Mariana & Frenger, Ivy & Getzlaff, Julia & Kriest, Iris & Xue, Tianfei & Shin, Yunne-Jai, 2022. "Understanding the drivers of fish variability in an end-to-end model of the Northern Humboldt Current System," Ecological Modelling, Elsevier, vol. 472(C).

    Corrections

    All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:eee:ecomod:v:250:y:2013:i:c:p:214-234. See general information about how to correct material in RePEc.

    If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.

    If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .

    If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.

    For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: Catherine Liu (email available below). General contact details of provider: http://www.journals.elsevier.com/ecological-modelling .

    Please note that corrections may take a couple of weeks to filter through the various RePEc services.

    IDEAS is a RePEc service. RePEc uses bibliographic data supplied by the respective publishers.