IDEAS home Printed from https://ideas.repec.org/a/eee/csdana/v72y2014icp227-240.html
   My bibliography  Save this article

Approximate inference for spatial functional data on massively parallel processors

Author

Listed:
  • Rakêt, Lars Lau
  • Markussen, Bo

Abstract

With continually increasing data sizes, the relevance of the big n problem of classical likelihood approaches is greater than ever. The functional mixed-effects model is a well established class of models for analyzing functional data. Spatial functional data in a mixed-effects setting is considered, and so-called operator approximations for doing inference in the resulting models are presented. These approximations embed observations in function space, transferring likelihood calculations to the functional domain. The resulting approximated problems are naturally parallel and can be solved in linear time. An extremely efficient GPU implementation is presented, and the proposed methods are illustrated by conducting a classical statistical analysis of 2D chromatography data consisting of more than 140 million spatially correlated observation points.11Code for analyzing spatial functional data on graphics processing units is available as Supplementary material.

Suggested Citation

  • Rakêt, Lars Lau & Markussen, Bo, 2014. "Approximate inference for spatial functional data on massively parallel processors," Computational Statistics & Data Analysis, Elsevier, vol. 72(C), pages 227-240.
  • Handle: RePEc:eee:csdana:v:72:y:2014:i:c:p:227-240
    DOI: 10.1016/j.csda.2013.10.016
    as

    Download full text from publisher

    File URL: http://www.sciencedirect.com/science/article/pii/S0167947313003708
    Download Restriction: Full text for ScienceDirect subscribers only.

    File URL: https://libkey.io/10.1016/j.csda.2013.10.016?utm_source=ideas
    LibKey link: if access is restricted and if your library uses this service, LibKey will redirect you to where you can use your library subscription to access this item
    ---><---

    As the access to this document is restricted, you may want to search for a different version of it.

    References listed on IDEAS

    as
    1. Yuedong Wang, 1998. "Mixed effects smoothing spline analysis of variance," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 60(1), pages 159-174.
    2. Alexandre Pintore & Paul Speckman & Chris C. Holmes, 2006. "Spatially adaptive smoothing splines," Biometrika, Biometrika Trust, vol. 93(1), pages 113-125, March.
    3. Wensheng Guo, 2002. "Functional Mixed Effects Models," Biometrics, The International Biometric Society, vol. 58(1), pages 121-128, March.
    4. Huaihou Chen & Yuanjia Wang, 2011. "A Penalized Spline Approach to Functional Mixed Effects Model Analysis," Biometrics, The International Biometric Society, vol. 67(3), pages 861-870, September.
    5. Yu Yue & Paul Speckman & Dongchu Sun, 2012. "Priors for Bayesian adaptive spline smoothing," Annals of the Institute of Statistical Mathematics, Springer;The Institute of Statistical Mathematics, vol. 64(3), pages 577-613, June.
    6. Lee, Dae-Jin & Durbán, María & Eilers, Paul, 2013. "Efficient two-dimensional smoothing with P-spline ANOVA mixed models and nested bases," Computational Statistics & Data Analysis, Elsevier, vol. 61(C), pages 22-37.
    7. Finn Lindgren & Håvard Rue & Johan Lindström, 2011. "An explicit link between Gaussian fields and Gaussian Markov random fields: the stochastic partial differential equation approach," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 73(4), pages 423-498, September.
    8. Vicente Núñez-Antón & Juan Rodríguez-Póo & Philippe Vieu, 1999. "Longitudinal data with nonstationary errors: a nonparametric three-stage approach," TEST: An Official Journal of the Spanish Society of Statistics and Operations Research, Springer;Sociedad de Estadística e Investigación Operativa, vol. 8(1), pages 201-231, June.
    Full references (including those not matched with items on IDEAS)

    Citations

    Citations are extracted by the CitEc Project, subscribe to its RSS feed for this item.
    as


    Cited by:

    1. Epifanio, Irene, 2016. "Functional archetype and archetypoid analysis," Computational Statistics & Data Analysis, Elsevier, vol. 104(C), pages 24-34.

    Most related items

    These are the items that most often cite the same works as this one and are cited by the same works as this one.
    1. Ruiyan Luo & Xin Qi, 2023. "Nonlinear function‐on‐scalar regression via functional universal approximation," Biometrics, The International Biometric Society, vol. 79(4), pages 3319-3331, December.
    2. Sue J. Welham & Brian R. Cullis & Michael G. Kenward & Robin Thompson, 2006. "The Analysis of Longitudinal Data Using Mixed Model L-Splines," Biometrics, The International Biometric Society, vol. 62(2), pages 392-401, June.
    3. Wesley K. Thompson & Ori Rosen, 2008. "A Bayesian Model for Sparse Functional Data," Biometrics, The International Biometric Society, vol. 64(1), pages 54-63, March.
    4. Daniel Gervini & Patrick A. Carter, 2014. "Warped functional analysis of variance," Biometrics, The International Biometric Society, vol. 70(3), pages 526-535, September.
    5. Moiseev, Nikita & Volodin, Andrei, 2019. "Increasing the accuracy of macroeconomic time series forecast by incorporating functional and correlational dependencies between them," Applied Econometrics, Russian Presidential Academy of National Economy and Public Administration (RANEPA), vol. 53, pages 119-137.
    6. Veerabhadran Baladandayuthapani & Bani K. Mallick & Mee Young Hong & Joanne R. Lupton & Nancy D. Turner & Raymond J. Carroll, 2008. "Bayesian Hierarchical Spatially Correlated Functional Data Analysis with Application to Colon Carcinogenesis," Biometrics, The International Biometric Society, vol. 64(1), pages 64-73, March.
    7. Li, Bin & Yu, Qingzhao, 2008. "Classification of functional data: A segmentation approach," Computational Statistics & Data Analysis, Elsevier, vol. 52(10), pages 4790-4800, June.
    8. Alena Bömmel & Song Song & Piotr Majer & Peter Mohr & Hauke Heekeren & Wolfgang Härdle, 2014. "Risk Patterns and Correlated Brain Activities. Multidimensional Statistical Analysis of fMRI Data in Economic Decision Making Study," Psychometrika, Springer;The Psychometric Society, vol. 79(3), pages 489-514, July.
    9. Rajala, T. & Penttinen, A., 2014. "Bayesian analysis of a Gibbs hard-core point pattern model with varying repulsion range," Computational Statistics & Data Analysis, Elsevier, vol. 71(C), pages 530-541.
    10. Ana-Maria Staicu & Yingxing Li & Ciprian M. Crainiceanu & David Ruppert, 2014. "Likelihood Ratio Tests for Dependent Data with Applications to Longitudinal and Functional Data Analysis," Scandinavian Journal of Statistics, Danish Society for Theoretical Statistics;Finnish Statistical Society;Norwegian Statistical Association;Swedish Statistical Association, vol. 41(4), pages 932-949, December.
    11. K. Shuvo Bakar & Nicholas Biddle & Philip Kokic & Huidong Jin, 2020. "A Bayesian spatial categorical model for prediction to overlapping geographical areas in sample surveys," Journal of the Royal Statistical Society Series A, Royal Statistical Society, vol. 183(2), pages 535-563, February.
    12. Laura M. Sangalli, 2021. "Spatial Regression With Partial Differential Equation Regularisation," International Statistical Review, International Statistical Institute, vol. 89(3), pages 505-531, December.
    13. Suvo Chatterjee & Shrabanti Chowdhury & Duchwan Ryu & Sanjib Basu, 2023. "Bayesian functional data analysis over dependent regions and its application for identification of differentially methylated regions," Biometrics, The International Biometric Society, vol. 79(4), pages 3294-3306, December.
    14. Matthias Katzfuss & Joseph Guinness & Wenlong Gong & Daniel Zilber, 2020. "Vecchia Approximations of Gaussian-Process Predictions," Journal of Agricultural, Biological and Environmental Statistics, Springer;The International Biometric Society;American Statistical Association, vol. 25(3), pages 383-414, September.
    15. Finn Lindgren, 2015. "Comments on: Comparing and selecting spatial predictors using local criteria," TEST: An Official Journal of the Spanish Society of Statistics and Operations Research, Springer;Sociedad de Estadística e Investigación Operativa, vol. 24(1), pages 35-44, March.
    16. Cao, Jiguo & Ramsay, James O., 2009. "Generalized profiling estimation for global and adaptive penalized spline smoothing," Computational Statistics & Data Analysis, Elsevier, vol. 53(7), pages 2550-2562, May.
    17. Andre Python & Andreas Bender & Marta Blangiardo & Janine B. Illian & Ying Lin & Baoli Liu & Tim C.D. Lucas & Siwei Tan & Yingying Wen & Davit Svanidze & Jianwei Yin, 2022. "A downscaling approach to compare COVID‐19 count data from databases aggregated at different spatial scales," Journal of the Royal Statistical Society Series A, Royal Statistical Society, vol. 185(1), pages 202-218, January.
    18. John A. D. Aston & Jeng‐Min Chiou & Jonathan P. Evans, 2010. "Linguistic pitch analysis using functional principal component mixed effect models," Journal of the Royal Statistical Society Series C, Royal Statistical Society, vol. 59(2), pages 297-317, March.
    19. Hongxiao Zhu & Philip J. Brown & Jeffrey S. Morris, 2012. "Robust Classification of Functional and Quantitative Image Data Using Functional Mixed Models," Biometrics, The International Biometric Society, vol. 68(4), pages 1260-1268, December.
    20. Jaroslaw Harezlak & Louise M. Ryan & Jay N. Giedd & Nicholas Lange, 2005. "Individual and Population Penalized Regression Splines for Accelerated Longitudinal Designs," Biometrics, The International Biometric Society, vol. 61(4), pages 1037-1048, December.

    Corrections

    All material on this site has been provided by the respective publishers and authors. You can help correct errors and omissions. When requesting a correction, please mention this item's handle: RePEc:eee:csdana:v:72:y:2014:i:c:p:227-240. See general information about how to correct material in RePEc.

    If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.

    If CitEc recognized a bibliographic reference but did not link an item in RePEc to it, you can help with this form .

    If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your RePEc Author Service profile, as there may be some citations waiting for confirmation.

    For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: Catherine Liu (email available below). General contact details of provider: http://www.elsevier.com/locate/csda .

    Please note that corrections may take a couple of weeks to filter through the various RePEc services.

    IDEAS is a RePEc service. RePEc uses bibliographic data supplied by the respective publishers.