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Multi-scale shotgun stochastic search for large spatial datasets

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  • Kirsner, Daniel
  • Sansó, Bruno

Abstract

Large spatial datasets often exhibit fine scale features that only occur in sub-domains of the space, coupled with large scale features at much larger ranges. A multi-scale spatial kernel convolution model is developed where fine scale local features are captured by high resolution knots while lower resolution terms are used to describe large scale features. This method achieves parsimony and explicitly identifies the sub-domains of the space that exhibit fine scale attributes by using a form of shotgun stochastic search coupled with a stochastic process prior that induces structured sparsity resulting in spatially varying resolution. In contrast to existing approaches, this approach does not require Markov chain Monte Carlo to produce a fully probabilistic quantification of the prediction uncertainty. In addition, the model does not require a maximum resolution to be specified in advance. The model fitting approach, based on Bayesian model averaging, is computationally feasible on large datasets, as computations for shotgun stochastic search can be performed in parallel, leveraging the availability of convenient formulas for fast updating the coefficients when adding a single knot. Competitive performance for computations, prediction, and interval estimation is demonstrated using simulation experiments and real data.

Suggested Citation

  • Kirsner, Daniel & Sansó, Bruno, 2020. "Multi-scale shotgun stochastic search for large spatial datasets," Computational Statistics & Data Analysis, Elsevier, vol. 146(C).
  • Handle: RePEc:eee:csdana:v:146:y:2020:i:c:s0167947320300220
    DOI: 10.1016/j.csda.2020.106931
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    References listed on IDEAS

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    1. Alexandra M. Schmidt & Anthony O'Hagan, 2003. "Bayesian inference for non‐stationary spatial covariance structure via spatial deformations," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 65(3), pages 743-758, August.
    2. Abhirup Datta & Sudipto Banerjee & Andrew O. Finley & Alan E. Gelfand, 2016. "Hierarchical Nearest-Neighbor Gaussian Process Models for Large Geostatistical Datasets," Journal of the American Statistical Association, Taylor & Francis Journals, vol. 111(514), pages 800-812, April.
    3. Kaufman, Cari G. & Schervish, Mark J. & Nychka, Douglas W., 2008. "Covariance Tapering for Likelihood-Based Estimation in Large Spatial Data Sets," Journal of the American Statistical Association, American Statistical Association, vol. 103(484), pages 1545-1555.
    4. Sudipto Banerjee & Alan E. Gelfand & Andrew O. Finley & Huiyan Sang, 2008. "Gaussian predictive process models for large spatial data sets," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 70(4), pages 825-848, September.
    5. P. Richard Hahn & Carlos M. Carvalho, 2015. "Decoupling Shrinkage and Selection in Bayesian Linear Models: A Posterior Summary Perspective," Journal of the American Statistical Association, Taylor & Francis Journals, vol. 110(509), pages 435-448, March.
    6. Luke Bornn & Gavin Shaddick & James V. Zidek, 2012. "Modeling Nonstationary Processes Through Dimension Expansion," Journal of the American Statistical Association, Taylor & Francis Journals, vol. 107(497), pages 281-289, March.
    7. Hans, Chris & Dobra, Adrian & West, Mike, 2007. "Shotgun Stochastic Search for," Journal of the American Statistical Association, American Statistical Association, vol. 102, pages 507-516, June.
    8. Liang, Feng & Paulo, Rui & Molina, German & Clyde, Merlise A. & Berger, Jim O., 2008. "Mixtures of g Priors for Bayesian Variable Selection," Journal of the American Statistical Association, American Statistical Association, vol. 103, pages 410-423, March.
    9. Matthias Katzfuss, 2017. "A Multi-Resolution Approximation for Massive Spatial Datasets," Journal of the American Statistical Association, Taylor & Francis Journals, vol. 112(517), pages 201-214, January.
    10. Yingbo Li & Merlise A. Clyde, 2018. "Mixtures of g-Priors in Generalized Linear Models," Journal of the American Statistical Association, Taylor & Francis Journals, vol. 113(524), pages 1828-1845, October.
    11. Lemos, Ricardo T. & Sansó, Bruno, 2009. "A Spatio-Temporal Model for Mean, Anomaly, and Trend Fields of North Atlantic Sea Surface Temperature," Journal of the American Statistical Association, American Statistical Association, vol. 104(485), pages 5-18.
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