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Evaluating a New Marker for Risk Prediction Using the Test Tradeoff: An Update

Author

Listed:
  • Baker Stuart G.

    (National Cancer Institute)

  • Van Calster Ben

    (Katholieke Universiteit Leuven and Erasmus MC)

  • Steyerberg Ewout W.

    (Erasmus MC)

Abstract

Most of the methodological literature on evaluating an additional marker for risk prediction involves purely statistical measures of classification performance. A disadvantage of a purely statistical measure is the difficulty in deciding the improvement in the measure that would make inclusion of the additional marker worthwhile. In contrast, a medical decision making approach can weigh the cost or harm of ascertaining an additional marker against the benefit of a higher true positive rate for a given false positive rate that may be associated with risk prediction involving the additional marker. An appealing form of the medical decision making approach involves the risk threshold, which is the risk at which the expected utility of treatment and no treatment is the same. In this framework, a readily interpretable evaluation of the net benefit of an additional marker is the test tradeoff corresponding to the risk threshold. The test tradeoff is the minimum number of tests for a new marker that need to be traded for a true positive to yield an increase in the net benefit of risk prediction with the additional marker. For a sensitivity analysis the test tradeoff is computed over multiple risk thresholds. This article updates the theory and estimation of the test tradeoff. An example is provided.

Suggested Citation

  • Baker Stuart G. & Van Calster Ben & Steyerberg Ewout W., 2012. "Evaluating a New Marker for Risk Prediction Using the Test Tradeoff: An Update," The International Journal of Biostatistics, De Gruyter, vol. 8(1), pages 1-37, March.
  • Handle: RePEc:bpj:ijbist:v:8:y:2012:i:1:n:5
    DOI: 10.1515/1557-4679.1395
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    References listed on IDEAS

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    1. Stuart G. Baker & Nancy R. Cook & Andrew Vickers & Barnett S. Kramer, 2009. "Using relative utility curves to evaluate risk prediction," Journal of the Royal Statistical Society Series A, Royal Statistical Society, vol. 172(4), pages 729-748, October.
    2. William M. Briggs & Russell Zaretzki, 2008. "The Skill Plot: A Graphical Technique for Evaluating Continuous Diagnostic Tests," Biometrics, The International Biometric Society, vol. 64(1), pages 250-256, March.
    3. Andrew J. Vickers & Elena B. Elkin, 2006. "Decision Curve Analysis: A Novel Method for Evaluating Prediction Models," Medical Decision Making, , vol. 26(6), pages 565-574, November.
    4. Gu Wen & Pepe Margaret, 2009. "Measures to Summarize and Compare the Predictive Capacity of Markers," The International Journal of Biostatistics, De Gruyter, vol. 5(1), pages 1-49, October.
    5. Vickers, Andrew J, 2008. "Decision Analysis for the Evaluation of Diagnostic Tests, Prediction Models, and Molecular Markers," The American Statistician, American Statistical Association, vol. 62(4), pages 314-320.
    6. Patrick J. Heagerty & Thomas Lumley & Margaret S. Pepe, 2000. "Time-Dependent ROC Curves for Censored Survival Data and a Diagnostic Marker," Biometrics, The International Biometric Society, vol. 56(2), pages 337-344, June.
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