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MMCTest—A Safe Algorithm for Implementing Multiple Monte Carlo Tests

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  • Axel Gandy
  • Georg Hahn

Abstract

type="main" xml:id="sjos12085-abs-0001"> Consider testing multiple hypotheses using tests that can only be evaluated by simulation, such as permutation tests or bootstrap tests. This article introduces MMCTest , a sequential algorithm that gives, with arbitrarily high probability, the same classification as a specific multiple testing procedure applied to ideal p-values. The method can be used with a class of multiple testing procedures that include the Benjamini and Hochberg false discovery rate procedure and the Bonferroni correction controlling the familywise error rate. One of the key features of the algorithm is that it stops sampling for all the hypotheses that can already be decided as being rejected or non-rejected. MMCTest can be interrupted at any stage and then returns three sets of hypotheses: the rejected, the non-rejected and the undecided hypotheses. A simulation study motivated by actual biological data shows that MMCTest is usable in practice and that, despite the additional guarantee, it can be computationally more efficient than other methods.

Suggested Citation

  • Axel Gandy & Georg Hahn, 2014. "MMCTest—A Safe Algorithm for Implementing Multiple Monte Carlo Tests," Scandinavian Journal of Statistics, Danish Society for Theoretical Statistics;Finnish Statistical Society;Norwegian Statistical Association;Swedish Statistical Association, vol. 41(4), pages 1083-1101, December.
    • Handle: RePEc:bla:scjsta:v:41:y:2014:i:4:p:1083-1101
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    File URL: http://hdl.handle.net/10.1111/sjos.12085
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    References listed on IDEAS

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    1. Nicolai Meinshausen, 2006. "False Discovery Control for Multiple Tests of Association Under General Dependence," Scandinavian Journal of Statistics, Danish Society for Theoretical Statistics;Finnish Statistical Society;Norwegian Statistical Association;Swedish Statistical Association, vol. 33(2), pages 227-237, June.
    2. Guo Wenge & Peddada Shyamal, 2008. "Adaptive Choice of the Number of Bootstrap Samples in Large Scale Multiple Testing," Statistical Applications in Genetics and Molecular Biology, De Gruyter, vol. 7(1), pages 1-21, March.
    3. Helmut Finner & Veronika Gontscharuk & Thorsten Dickhaus, 2012. "False Discovery Rate Control of Step-Up-Down Tests with Special Emphasis on the Asymptotically Optimal Rejection Curve," Scandinavian Journal of Statistics, Danish Society for Theoretical Statistics;Finnish Statistical Society;Norwegian Statistical Association;Swedish Statistical Association, vol. 39(2), pages 382-397, June.
    4. Gandy, Axel, 2009. "Sequential Implementation of Monte Carlo Tests With Uniformly Bounded Resampling Risk," Journal of the American Statistical Association, American Statistical Association, vol. 104(488), pages 1504-1511.
    5. Alessio Farcomeni, 2007. "Some Results on the Control of the False Discovery Rate under Dependence," Scandinavian Journal of Statistics, Danish Society for Theoretical Statistics;Finnish Statistical Society;Norwegian Statistical Association;Swedish Statistical Association, vol. 34(2), pages 275-297, June.
    6. Hui Jiang & Julia Salzman, 2012. "Statistical properties of an early stopping rule for resampling-based multiple testing," Biometrika, Biometrika Trust, vol. 99(4), pages 973-980.
    7. Jialiang Li & Bee Tai & David Nott, 2009. "Confidence interval for the bootstrap -value and sample size calculation of the bootstrap test," Journal of Nonparametric Statistics, Taylor & Francis Journals, vol. 21(5), pages 649-661.
    8. Alessio Farcomeni, 2009. "Generalized Augmentation to Control the False Discovery Exceedance in Multiple Testing," Scandinavian Journal of Statistics, Danish Society for Theoretical Statistics;Finnish Statistical Society;Norwegian Statistical Association;Swedish Statistical Association, vol. 36(3), pages 501-517, September.
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    1. Hahn, Georg, 2022. "Online multivariate changepoint detection with type I error control and constant time/memory updates per series," Statistics & Probability Letters, Elsevier, vol. 181(C).
    2. Georg Hahn, 2018. "Closure properties of classes of multiple testing procedures," AStA Advances in Statistical Analysis, Springer;German Statistical Society, vol. 102(2), pages 167-178, April.
    3. Axel Gandy & Georg Hahn, 2016. "A Framework for Monte Carlo based Multiple Testing," Scandinavian Journal of Statistics, Danish Society for Theoretical Statistics;Finnish Statistical Society;Norwegian Statistical Association;Swedish Statistical Association, vol. 43(4), pages 1046-1063, December.
    4. Hahn, Georg, 2020. "On the expected runtime of multiple testing algorithms with bounded error," Statistics & Probability Letters, Elsevier, vol. 165(C).
    5. Dong Ding & Axel Gandy & Georg Hahn, 2020. "A simple method for implementing Monte Carlo tests," Computational Statistics, Springer, vol. 35(3), pages 1373-1392, September.
    6. Axel Gandy & Georg Hahn & Dong Ding, 2020. "Implementing Monte Carlo tests with p‐value buckets," Scandinavian Journal of Statistics, Danish Society for Theoretical Statistics;Finnish Statistical Society;Norwegian Statistical Association;Swedish Statistical Association, vol. 47(3), pages 950-967, September.

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