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RNA Folding at Elementary Step Resolution

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Author Info
Christoph Flamm
Walter Fontana
Ivo L. Hofacker
Peter Schuster
Abstract

We study the stochastic folding kinetics of RNA sequences into secondary structures with a new algorithm based on the formation, dissociation, and the shifting of individual base pairs. We discuss folding mechanisms and the correlation between the barrier structure of the conformational landscape and the folding kinetics for a number of examples based on artificial and natural sequences, inculding the influence of base modification in tRNAs.

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Publisher Info
Paper provided by Santa Fe Institute in its series Working Papers with number 99-12-078.

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Date of creation: Dec 1999
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Handle: RePEc:wop:safiwp:99-12-078

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Related research
Keywords: RNA folding kinetics; foldability; conformational spaces; RNA secondary structure.;

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  1. Lauren W. Ancel & Walter Fontana, 1999. "Plasticity, Evolvability and Modularity in RNA," Working Papers 99-12-077, Santa Fe Institute.
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