In this paper we implement a Fourier method to estimate high frequency correlation matrices from small data sets. The Fourier estimates are shown to be considerably less noisy than the standard Pearson correlation measure and thus capable of detecting subtle changes in correlation matrices with just a month of data. The evolution of correlation at different time scales is analysed from the full correlation matrix and its Minimum Spanning Tree representation. The analysis is performed by implementing measures from the theory of random weighted networks.
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