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A recursive algorithm for Markov random fields

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  • Francesco Bartolucci

Abstract

We propose a recursive algorithm as a more useful alternative to the Brook expansion for the joint distribution of a vector of random variables when the original formulation is in terms of the corresponding full conditional distributions, as occurs for Markov random fields. Usually, in practical applications, the computational load will still be excessive but then the algorithm can be used to obtain the componentwise full conditionals of a system after marginalising over some variables or the joint distribution of subsets of the variables, conditioned on values of the remainder, which is required for block Gibbs sampling. As an illustrative example, we apply the algorithm in the simplest nontrivial setting of hidden Markov chains. More important, we demonstrate how it applies to Markov random fields on regular lattices and to perfect block Gibbs sampling for binary systems. Copyright Biometrika Trust 2002, Oxford University Press.

Suggested Citation

  • Francesco Bartolucci, 2002. "A recursive algorithm for Markov random fields," Biometrika, Biometrika Trust, vol. 89(3), pages 724-730, August.
  • Handle: RePEc:oup:biomet:v:89:y:2002:i:3:p:724-730
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    References listed on IDEAS

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    1. C. P. Robert & T. Rydén & D. M. Titterington, 2000. "Bayesian inference in hidden Markov models through the reversible jump Markov chain Monte Carlo method," Journal of the Royal Statistical Society Series B, Royal Statistical Society, vol. 62(1), pages 57-75.
    2. Karlin, Samuel & Rinott, Yosef, 1980. "Classes of orderings of measures and related correlation inequalities II. Multivariate reverse rule distributions," Journal of Multivariate Analysis, Elsevier, vol. 10(4), pages 499-516, December.
    3. Karlin, Samuel & Rinott, Yosef, 1980. "Classes of orderings of measures and related correlation inequalities. I. Multivariate totally positive distributions," Journal of Multivariate Analysis, Elsevier, vol. 10(4), pages 467-498, December.
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    Cited by:

    1. R. Reeves, 2004. "Efficient recursions for general factorisable models," Biometrika, Biometrika Trust, vol. 91(3), pages 751-757, September.
    2. Rulloni, Valeria, 2014. "Uniqueness condition for an auto-logistic model," Statistics & Probability Letters, Elsevier, vol. 87(C), pages 1-6.
    3. Wanchuang Zhu & Yanan Fan, 2023. "A synthetic likelihood approach for intractable markov random fields," Computational Statistics, Springer, vol. 38(2), pages 749-777, June.
    4. Cécile Hardouin & Xavier Guyon, 2014. "Recursions on the marginals and exact computation of the normalizing constant for Gibbs processes," Computational Statistics, Springer, vol. 29(6), pages 1637-1650, December.
    5. Daniel A Griffith, 2004. "A Spatial Filtering Specification for the Autologistic Model," Environment and Planning A, , vol. 36(10), pages 1791-1811, October.
    6. Francesco Bartolucci & Alessio Farcomeni, 2010. "A note on the mixture transition distribution and hidden Markov models," Journal of Time Series Analysis, Wiley Blackwell, vol. 31(2), pages 132-138, March.
    7. Bartolucci, Francesco, 2011. "An alternative to the Baum-Welch recursions for hidden Markov models," MPRA Paper 38778, University Library of Munich, Germany.
    8. Cai, Bo & Dunson, David B., 2007. "Bayesian Multivariate Isotonic Regression Splines: Applications to Carcinogenicity Studies," Journal of the American Statistical Association, American Statistical Association, vol. 102, pages 1158-1171, December.
    9. Magnussen, Steen & Reeves, Rob, 2008. "A method for bias-reduction of sample-based MLE of the autologistic model," Computational Statistics & Data Analysis, Elsevier, vol. 53(1), pages 103-111, September.
    10. Lim, Johan & Wang, Xinlei & Sherman, Michael, 2007. "An adjustment for edge effects using an augmented neighborhood model in the spatial auto-logistic model," Computational Statistics & Data Analysis, Elsevier, vol. 51(8), pages 3679-3688, May.
    11. Nial Friel & Håvard Rue, 2007. "Recursive computing and simulation-free inference for general factorizable models," Biometrika, Biometrika Trust, vol. 94(3), pages 661-672.

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