Advanced Search
MyIDEAS: Login to save this article or follow this journal

BiplotGUI: Interactive Biplots in R

Contents:

Author Info

  • Anthony la Grange
  • Niël le Roux
  • Sugnet Gardner-Lubbe
Registered author(s):

    Abstract

    Biplots simultaneously provide information on both the samples and the variables of a data matrix in two- or three-dimensional representations. The BiplotGUI package provides a graphical user interface for the construction of, interaction with, and manipulation of biplots in R. The samples are represented as points, with coordinates determined either by the choice of biplot, principal coordinate analysis or multidimensional scaling. Various transformations and dissimilarity metrics are available. Information on the original variables is incorporated by linear or non-linear calibrated axes. Goodness-of-fit measures are provided. Additional descriptors can be superimposed, including convex hulls, alpha-bags, point densities and classification regions. Amongst the interactive features are dynamic variable value prediction, zooming and point and axis drag-and-drop. Output can easily be exported to the R workspace for further manipulation. Three-dimensional biplots are incorporated via the rgl package. The user requires almost no knowledge of R syntax.

    Download Info

    If you experience problems downloading a file, check if you have the proper application to view it first. In case of further problems read the IDEAS help page. Note that these files are not on the IDEAS site. Please be patient as the files may be large.
    File URL: http://www.jstatsoft.org/v30/i12/paper
    File Function: link to download full text
    Download Restriction: no

    Bibliographic Info

    Article provided by American Statistical Association in its journal Journal of Statistical Software.

    Volume (Year): 30 ()
    Issue (Month): i12 ()
    Pages:

    as in new window
    Handle: RePEc:jss:jstsof:30:i12

    Contact details of provider:
    Web page: http://www.jstatsoft.org/

    Related research

    Keywords:

    References

    References listed on IDEAS
    Please report citation or reference errors to , or , if you are the registered author of the cited work, log in to your RePEc Author Service profile, click on "citations" and make appropriate adjustments.:
    as in new window
    1. Roger Shepard, 1962. "The analysis of proximities: Multidimensional scaling with an unknown distance function. II," Psychometrika, Springer, vol. 27(3), pages 219-246, September.
    2. J. Kruskal, 1964. "Nonmetric multidimensional scaling: A numerical method," Psychometrika, Springer, vol. 29(2), pages 115-129, June.
    3. Gower, John C. & Ngouenet, Roger F., 2005. "Nonlinearity effects in multidimensional scaling," Journal of Multivariate Analysis, Elsevier, vol. 94(2), pages 344-365, June.
    4. Blasius, Jörg & Eilers, Paul H.C. & Gower, John, 2009. "Better biplots," Computational Statistics & Data Analysis, Elsevier, vol. 53(8), pages 3145-3158, June.
    5. Sugnet Gardner-Lubbe & Ni�l Le Roux & John Gowers, 2008. "Measures of fit in principal component and canonical variate analyses," Journal of Applied Statistics, Taylor & Francis Journals, vol. 35(9), pages 947-965.
    6. Roger Shepard, 1962. "The analysis of proximities: Multidimensional scaling with an unknown distance function. I," Psychometrika, Springer, vol. 27(2), pages 125-140, June.
    7. Frederic Udina, . "Interactive Biplot Construction," Journal of Statistical Software, American Statistical Association, vol. 13(i05).
    8. Jean Thioulouse & Stéphane Dray, . "Interactive Multivariate Data Analysis in R with the ade4 and ade4TkGUI Packages," Journal of Statistical Software, American Statistical Association, vol. 22(i05).
    9. J. C. Gower & J. J. Meulman & G. M. Arnold, 1999. "Nonmetric Linear Biplots," Journal of Classification, Springer, vol. 16(2), pages 181-196, July.
    10. Stéphane Dray & Anne-Béatrice Dufour, . "The ade4 Package: Implementing the Duality Diagram for Ecologists," Journal of Statistical Software, American Statistical Association, vol. 22(i04).
    11. J. Gower & P. Legendre, 1986. "Metric and Euclidean properties of dissimilarity coefficients," Journal of Classification, Springer, vol. 3(1), pages 5-48, March.
    12. Leslie Underhill, 1990. "The coefficient of variation biplot," Journal of Classification, Springer, vol. 7(2), pages 241-256, September.
    Full references (including those not matched with items on IDEAS)

    Citations

    Lists

    This item is not listed on Wikipedia, on a reading list or among the top items on IDEAS.

    Statistics

    Access and download statistics

    Corrections

    When requesting a correction, please mention this item's handle: RePEc:jss:jstsof:30:i12. See general information about how to correct material in RePEc.

    For technical questions regarding this item, or to correct its authors, title, abstract, bibliographic or download information, contact: (Christopher F. Baum).

    If you have authored this item and are not yet registered with RePEc, we encourage you to do it here. This allows to link your profile to this item. It also allows you to accept potential citations to this item that we are uncertain about.

    If references are entirely missing, you can add them using this form.

    If the full references list an item that is present in RePEc, but the system did not link to it, you can help with this form.

    If you know of missing items citing this one, you can help us creating those links by adding the relevant references in the same way as above, for each refering item. If you are a registered author of this item, you may also want to check the "citations" tab in your profile, as there may be some citations waiting for confirmation.

    Please note that corrections may take a couple of weeks to filter through the various RePEc services.