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3D graphical representation of protein sequences and their statistical characterization

Author

Listed:
  • Abo el Maaty, Moheb I.
  • Abo-Elkhier, Mervat M.
  • Abd Elwahaab, Marwa A.

Abstract

Based on three physicochemical properties of amino acid side chains, we proposed a novel unique 3D graphical representation of protein sequences. Then, we constructed two vectors of three components as mathematical objects to characterize protein sequences numerically. The similarity/dissimilarity analysis among nine ND5 protein sequences proved the utility of our approach. A correlation and significance analysis have been provided to compare our results and the sequence homology.

Suggested Citation

  • Abo el Maaty, Moheb I. & Abo-Elkhier, Mervat M. & Abd Elwahaab, Marwa A., 2010. "3D graphical representation of protein sequences and their statistical characterization," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 389(21), pages 4668-4676.
    • Handle: RePEc:eee:phsmap:v:389:y:2010:i:21:p:4668-4676
    DOI: 10.1016/j.physa.2010.06.031
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    Citations

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    Cited by:

    1. Mahmoodi-Reihani, Mehri & Abbasitabar, Fatemeh & Zare-Shahabadi, Vahid, 2018. "A novel graphical representation and similarity analysis of protein sequences based on physicochemical properties," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 510(C), pages 477-485.
    2. He, Ping-an & Wei, Jinzhou & Yao, Yuhua & Tie, Zhixin, 2012. "A novel graphical representation of proteins and its application," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 391(1), pages 93-99.
    3. Hou, Wenbing & Pan, Qiuhui & He, Mingfeng, 2016. "A new graphical representation of protein sequences and its applications," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 444(C), pages 996-1002.
    4. Ma, Tingting & Liu, Yuxin & Dai, Qi & Yao, Yuhua & He, Ping-an, 2014. "A graphical representation of protein based on a novel iterated function system," Physica A: Statistical Mechanics and its Applications, Elsevier, vol. 403(C), pages 21-28.

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