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Selecting the number of components in principal component analysis using cross-validation approximations

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  • Josse, Julie
  • Husson, François

Abstract

Cross-validation is a tried and tested approach to select the number of components in principal component analysis (PCA), however, its main drawback is its computational cost. In a regression (or in a non parametric regression) setting, criteria such as the general cross-validation one (GCV) provide convenient approximations to leave-one-out cross-validation. They are based on the relation between the prediction error and the residual sum of squares weighted by elements of a projection matrix (or a smoothing matrix). Such a relation is then established in PCA using an original presentation of PCA with a unique projection matrix. It enables the definition of two cross-validation approximation criteria: the smoothing approximation of the cross-validation criterion (SACV) and the GCV criterion. The method is assessed with simulations and gives promising results.

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  • Josse, Julie & Husson, François, 2012. "Selecting the number of components in principal component analysis using cross-validation approximations," Computational Statistics & Data Analysis, Elsevier, vol. 56(6), pages 1869-1879.
  • Handle: RePEc:eee:csdana:v:56:y:2012:i:6:p:1869-1879
    DOI: 10.1016/j.csda.2011.11.012
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    6. Julie Josse & Jérôme Pagès & François Husson, 2011. "Multiple imputation in principal component analysis," Advances in Data Analysis and Classification, Springer;German Classification Society - Gesellschaft für Klassifikation (GfKl);Japanese Classification Society (JCS);Classification and Data Analysis Group of the Italian Statistical Society (CLADAG);International Federation of Classification Societies (IFCS), vol. 5(3), pages 231-246, October.
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